Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25780 and PS417_25785 are separated by 1 nucleotides PS417_25785 and PS417_25790 overlap by 4 nucleotides PS417_25790 and PS417_25795 are separated by 130 nucleotides
PS417_25780: PS417_25780 - molecular chaperone DnaJ, at 5,566,149 to 5,566,916
_25780
PS417_25785: PS417_25785 - mannose-1-phosphate guanylyltransferase, at 5,566,918 to 5,567,592
_25785
PS417_25790: PS417_25790 - aminoglycoside phosphotransferase, at 5,567,589 to 5,568,614
_25790
PS417_25795: PS417_25795 - LPS biosynthesis protein, at 5,568,745 to 5,571,555
_25795
Position (kb) 5567
5568
5569 Strain fitness (log2 ratio) -2
-1
0
1 at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.593 kb on - strand at 5567.677 kb on - strand at 5567.678 kb on + strand at 5567.679 kb on - strand at 5567.679 kb on - strand at 5567.680 kb on + strand at 5567.680 kb on + strand at 5567.932 kb on + strand, within PS417_25790 at 5567.933 kb on - strand, within PS417_25790 at 5567.948 kb on - strand, within PS417_25790 at 5568.011 kb on + strand, within PS417_25790 at 5568.011 kb on + strand at 5568.013 kb on + strand, within PS417_25790 at 5568.013 kb on + strand, within PS417_25790 at 5568.134 kb on - strand, within PS417_25790 at 5568.182 kb on - strand, within PS417_25790 at 5568.182 kb on - strand, within PS417_25790 at 5568.591 kb on + strand at 5568.598 kb on - strand at 5568.615 kb on + strand at 5568.616 kb on - strand at 5568.659 kb on + strand at 5568.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 5,567,593 - +0.3 5,567,593 - -2.7 5,567,593 - -0.4 5,567,593 - -1.0 5,567,677 - -0.9 5,567,678 + -0.1 5,567,679 - +1.7 5,567,679 - +0.5 5,567,680 + +0.7 5,567,680 + -0.1 5,567,932 + PS417_25790 0.33 -1.3 5,567,933 - PS417_25790 0.34 -0.0 5,567,948 - PS417_25790 0.35 -0.6 5,568,011 + PS417_25790 0.41 +0.6 5,568,011 + +0.5 5,568,013 + PS417_25790 0.41 -0.1 5,568,013 + PS417_25790 0.41 -1.1 5,568,134 - PS417_25790 0.53 -0.3 5,568,182 - PS417_25790 0.58 +1.1 5,568,182 - PS417_25790 0.58 -0.4 5,568,591 + +0.4 5,568,598 - -0.1 5,568,615 + -0.1 5,568,616 - +0.3 5,568,659 + +0.0 5,568,659 + -0.4
Or see this region's nucleotide sequence