Strain Fitness in Pseudomonas simiae WCS417 around PS417_23705

Experiment: Wcs_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23700 and PS417_23705 are separated by 157 nucleotidesPS417_23705 and PS417_23710 overlap by 4 nucleotides PS417_23700: PS417_23700 - aromatic amino acid transporter, at 5,124,433 to 5,125,836 _23700 PS417_23705: PS417_23705 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data), at 5,125,994 to 5,126,851 _23705 PS417_23710: PS417_23710 - Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data), at 5,126,848 to 5,127,498 _23710 Position (kb) 5125 5126 5127Strain fitness (log2 ratio) -1 0 1 2 3at 5125.513 kb on + strand, within PS417_23700at 5125.513 kb on + strand, within PS417_23700at 5125.678 kb on + strand, within PS417_23700at 5125.679 kb on - strand, within PS417_23700at 5125.679 kb on - strand, within PS417_23700at 5125.750 kb on + strandat 5125.750 kb on + strandat 5125.776 kb on + strandat 5125.776 kb on + strandat 5125.776 kb on + strandat 5125.837 kb on + strandat 5125.837 kb on + strandat 5125.838 kb on - strandat 5125.838 kb on - strandat 5125.899 kb on - strandat 5125.995 kb on + strandat 5126.058 kb on + strandat 5126.058 kb on + strandat 5126.185 kb on - strand, within PS417_23705at 5126.214 kb on + strand, within PS417_23705at 5126.422 kb on + strand, within PS417_23705at 5126.505 kb on + strand, within PS417_23705at 5126.505 kb on + strand, within PS417_23705at 5126.757 kb on + strand, within PS417_23705at 5127.158 kb on + strand, within PS417_23710at 5127.189 kb on + strand, within PS417_23710at 5127.189 kb on + strand, within PS417_23710at 5127.269 kb on + strand, within PS417_23710at 5127.269 kb on + strand, within PS417_23710at 5127.269 kb on + strand, within PS417_23710at 5127.270 kb on - strand, within PS417_23710at 5127.314 kb on + strand, within PS417_23710at 5127.315 kb on - strand, within PS417_23710at 5127.532 kb on + strandat 5127.533 kb on - strandat 5127.594 kb on + strandat 5127.622 kb on + strandat 5127.622 kb on + strandat 5127.626 kb on + strandat 5127.627 kb on - strandat 5127.627 kb on - strandat 5127.627 kb on - strandat 5127.627 kb on - strandat 5127.629 kb on - strandat 5127.629 kb on - strandat 5127.696 kb on + strandat 5127.710 kb on + strandat 5127.710 kb on + strandat 5127.710 kb on + strandat 5127.710 kb on + strandat 5127.711 kb on - strandat 5127.711 kb on - strandat 5127.711 kb on - strandat 5127.711 kb on - strandat 5127.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_0.1
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5,125,513 + PS417_23700 0.77 -1.6
5,125,513 + PS417_23700 0.77 -0.5
5,125,678 + PS417_23700 0.89 -0.4
5,125,679 - PS417_23700 0.89 +0.1
5,125,679 - PS417_23700 0.89 +1.0
5,125,750 + +2.8
5,125,750 + -1.5
5,125,776 + -0.9
5,125,776 + -1.2
5,125,776 + +0.0
5,125,837 + -0.2
5,125,837 + -0.8
5,125,838 - +1.0
5,125,838 - +0.8
5,125,899 - +0.6
5,125,995 + +0.2
5,126,058 + -1.0
5,126,058 + -0.2
5,126,185 - PS417_23705 0.22 -0.8
5,126,214 + PS417_23705 0.26 +0.2
5,126,422 + PS417_23705 0.50 -0.9
5,126,505 + PS417_23705 0.60 -0.7
5,126,505 + PS417_23705 0.60 -0.9
5,126,757 + PS417_23705 0.89 -1.2
5,127,158 + PS417_23710 0.48 +1.6
5,127,189 + PS417_23710 0.52 -0.2
5,127,189 + PS417_23710 0.52 +0.9
5,127,269 + PS417_23710 0.65 -0.9
5,127,269 + PS417_23710 0.65 +0.4
5,127,269 + PS417_23710 0.65 -0.3
5,127,270 - PS417_23710 0.65 -0.3
5,127,314 + PS417_23710 0.72 +0.7
5,127,315 - PS417_23710 0.72 +0.8
5,127,532 + -0.3
5,127,533 - +0.8
5,127,594 + -1.3
5,127,622 + +0.3
5,127,622 + +1.4
5,127,626 + +2.3
5,127,627 - +2.5
5,127,627 - -0.7
5,127,627 - +1.5
5,127,627 - +0.6
5,127,629 - +0.6
5,127,629 - +0.2
5,127,696 + +0.1
5,127,710 + +1.0
5,127,710 + -1.7
5,127,710 + +1.0
5,127,710 + +0.8
5,127,711 - +0.8
5,127,711 - -0.9
5,127,711 - -0.5
5,127,711 - -1.7
5,127,711 - -0.4

Or see this region's nucleotide sequence