Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23040 and PS417_23045 are separated by 69 nucleotides PS417_23045 and PS417_23050 are separated by 135 nucleotides
PS417_23040: PS417_23040 - D-trehalose outer membrane porin (from data) , at 4,993,196 to 4,994,416
_23040
PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) , at 4,994,486 to 4,996,132
_23045
PS417_23050: PS417_23050 - trehalose PTS system, EII-BC components TreB (from data) , at 4,996,268 to 4,997,710
_23050
Position (kb)
4994
4995
4996
4997 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4993.561 kb on - strand, within PS417_23040 at 4993.664 kb on - strand, within PS417_23040 at 4993.666 kb on - strand, within PS417_23040 at 4993.800 kb on + strand, within PS417_23040 at 4993.800 kb on + strand, within PS417_23040 at 4993.801 kb on - strand, within PS417_23040 at 4993.801 kb on - strand, within PS417_23040 at 4993.806 kb on - strand, within PS417_23040 at 4993.806 kb on - strand, within PS417_23040 at 4993.876 kb on - strand, within PS417_23040 at 4993.920 kb on + strand, within PS417_23040 at 4993.920 kb on + strand, within PS417_23040 at 4993.980 kb on + strand, within PS417_23040 at 4993.981 kb on - strand, within PS417_23040 at 4993.996 kb on + strand, within PS417_23040 at 4994.009 kb on - strand, within PS417_23040 at 4994.016 kb on + strand, within PS417_23040 at 4994.016 kb on + strand, within PS417_23040 at 4994.019 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.079 kb on + strand, within PS417_23040 at 4994.139 kb on + strand, within PS417_23040 at 4994.139 kb on + strand, within PS417_23040 at 4994.148 kb on + strand, within PS417_23040 at 4994.436 kb on - strand at 4995.021 kb on + strand, within PS417_23045 at 4995.081 kb on + strand, within PS417_23045 at 4995.081 kb on + strand, within PS417_23045 at 4995.465 kb on + strand, within PS417_23045 at 4995.936 kb on + strand, within PS417_23045 at 4996.024 kb on - strand at 4996.105 kb on - strand at 4996.105 kb on - strand at 4996.394 kb on - strand at 4996.750 kb on - strand, within PS417_23050 at 4996.966 kb on - strand, within PS417_23050 at 4997.002 kb on - strand, within PS417_23050 at 4997.043 kb on + strand, within PS417_23050
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 4,993,561 - PS417_23040 0.30 -0.0 4,993,664 - PS417_23040 0.38 +1.2 4,993,666 - PS417_23040 0.38 -0.4 4,993,800 + PS417_23040 0.49 +0.8 4,993,800 + PS417_23040 0.49 +0.2 4,993,801 - PS417_23040 0.50 +0.7 4,993,801 - PS417_23040 0.50 +0.7 4,993,806 - PS417_23040 0.50 -0.3 4,993,806 - PS417_23040 0.50 -0.2 4,993,876 - PS417_23040 0.56 +0.2 4,993,920 + PS417_23040 0.59 +0.1 4,993,920 + PS417_23040 0.59 +0.7 4,993,980 + PS417_23040 0.64 +0.1 4,993,981 - PS417_23040 0.64 -0.7 4,993,996 + PS417_23040 0.66 +0.4 4,994,009 - PS417_23040 0.67 -0.6 4,994,016 + PS417_23040 0.67 +0.0 4,994,016 + PS417_23040 0.67 -0.2 4,994,019 + PS417_23040 0.67 +1.8 4,994,079 + PS417_23040 0.72 -0.3 4,994,079 + PS417_23040 0.72 +3.6 4,994,079 + PS417_23040 0.72 +0.2 4,994,139 + PS417_23040 0.77 -0.7 4,994,139 + PS417_23040 0.77 +1.6 4,994,148 + PS417_23040 0.78 +0.6 4,994,436 - -0.8 4,995,021 + PS417_23045 0.32 -1.5 4,995,081 + PS417_23045 0.36 +0.2 4,995,081 + PS417_23045 0.36 -1.0 4,995,465 + PS417_23045 0.59 -1.8 4,995,936 + PS417_23045 0.88 -1.2 4,996,024 - -0.4 4,996,105 - -0.9 4,996,105 - -0.0 4,996,394 - +0.4 4,996,750 - PS417_23050 0.33 -0.5 4,996,966 - PS417_23050 0.48 -0.1 4,997,002 - PS417_23050 0.51 -0.1 4,997,043 + PS417_23050 0.54 +0.2
Or see this region's nucleotide sequence