Strain Fitness in Pseudomonas simiae WCS417 around PS417_23045

Experiment: Wcs_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23040 and PS417_23045 are separated by 69 nucleotidesPS417_23045 and PS417_23050 are separated by 135 nucleotides PS417_23040: PS417_23040 - D-trehalose outer membrane porin (from data), at 4,993,196 to 4,994,416 _23040 PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data), at 4,994,486 to 4,996,132 _23045 PS417_23050: PS417_23050 - trehalose PTS system, EII-BC components TreB (from data), at 4,996,268 to 4,997,710 _23050 Position (kb) 4994 4995 4996 4997Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4993.561 kb on - strand, within PS417_23040at 4993.664 kb on - strand, within PS417_23040at 4993.666 kb on - strand, within PS417_23040at 4993.800 kb on + strand, within PS417_23040at 4993.800 kb on + strand, within PS417_23040at 4993.801 kb on - strand, within PS417_23040at 4993.801 kb on - strand, within PS417_23040at 4993.806 kb on - strand, within PS417_23040at 4993.806 kb on - strand, within PS417_23040at 4993.876 kb on - strand, within PS417_23040at 4993.920 kb on + strand, within PS417_23040at 4993.920 kb on + strand, within PS417_23040at 4993.980 kb on + strand, within PS417_23040at 4993.981 kb on - strand, within PS417_23040at 4993.996 kb on + strand, within PS417_23040at 4994.009 kb on - strand, within PS417_23040at 4994.016 kb on + strand, within PS417_23040at 4994.016 kb on + strand, within PS417_23040at 4994.019 kb on + strand, within PS417_23040at 4994.079 kb on + strand, within PS417_23040at 4994.079 kb on + strand, within PS417_23040at 4994.079 kb on + strand, within PS417_23040at 4994.139 kb on + strand, within PS417_23040at 4994.139 kb on + strand, within PS417_23040at 4994.148 kb on + strand, within PS417_23040at 4994.436 kb on - strandat 4995.021 kb on + strand, within PS417_23045at 4995.081 kb on + strand, within PS417_23045at 4995.081 kb on + strand, within PS417_23045at 4995.465 kb on + strand, within PS417_23045at 4995.936 kb on + strand, within PS417_23045at 4996.024 kb on - strandat 4996.105 kb on - strandat 4996.105 kb on - strandat 4996.394 kb on - strandat 4996.750 kb on - strand, within PS417_23050at 4996.966 kb on - strand, within PS417_23050at 4997.002 kb on - strand, within PS417_23050at 4997.043 kb on + strand, within PS417_23050

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_0.1
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4,993,561 - PS417_23040 0.30 -0.0
4,993,664 - PS417_23040 0.38 +1.2
4,993,666 - PS417_23040 0.38 -0.4
4,993,800 + PS417_23040 0.49 +0.8
4,993,800 + PS417_23040 0.49 +0.2
4,993,801 - PS417_23040 0.50 +0.7
4,993,801 - PS417_23040 0.50 +0.7
4,993,806 - PS417_23040 0.50 -0.3
4,993,806 - PS417_23040 0.50 -0.2
4,993,876 - PS417_23040 0.56 +0.2
4,993,920 + PS417_23040 0.59 +0.1
4,993,920 + PS417_23040 0.59 +0.7
4,993,980 + PS417_23040 0.64 +0.1
4,993,981 - PS417_23040 0.64 -0.7
4,993,996 + PS417_23040 0.66 +0.4
4,994,009 - PS417_23040 0.67 -0.6
4,994,016 + PS417_23040 0.67 +0.0
4,994,016 + PS417_23040 0.67 -0.2
4,994,019 + PS417_23040 0.67 +1.8
4,994,079 + PS417_23040 0.72 -0.3
4,994,079 + PS417_23040 0.72 +3.6
4,994,079 + PS417_23040 0.72 +0.2
4,994,139 + PS417_23040 0.77 -0.7
4,994,139 + PS417_23040 0.77 +1.6
4,994,148 + PS417_23040 0.78 +0.6
4,994,436 - -0.8
4,995,021 + PS417_23045 0.32 -1.5
4,995,081 + PS417_23045 0.36 +0.2
4,995,081 + PS417_23045 0.36 -1.0
4,995,465 + PS417_23045 0.59 -1.8
4,995,936 + PS417_23045 0.88 -1.2
4,996,024 - -0.4
4,996,105 - -0.9
4,996,105 - -0.0
4,996,394 - +0.4
4,996,750 - PS417_23050 0.33 -0.5
4,996,966 - PS417_23050 0.48 -0.1
4,997,002 - PS417_23050 0.51 -0.1
4,997,043 + PS417_23050 0.54 +0.2

Or see this region's nucleotide sequence