Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22575 and PS417_22580 are separated by 167 nucleotides PS417_22580 and PS417_22585 overlap by 4 nucleotides PS417_22585 and PS417_22590 overlap by 14 nucleotides
PS417_22575: PS417_22575 - exonuclease I, at 4,887,964 to 4,889,391
_22575
PS417_22580: PS417_22580 - membrane protein, at 4,889,559 to 4,890,251
_22580
PS417_22585: PS417_22585 - membrane protein, at 4,890,248 to 4,891,228
_22585
PS417_22590: PS417_22590 - membrane protein, at 4,891,215 to 4,892,744
_22590
Position (kb) 4889
4890
4891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4888.571 kb on + strand, within PS417_22575 at 4888.572 kb on - strand, within PS417_22575 at 4888.697 kb on + strand, within PS417_22575 at 4888.728 kb on + strand, within PS417_22575 at 4888.729 kb on - strand, within PS417_22575 at 4888.729 kb on - strand, within PS417_22575 at 4888.729 kb on - strand, within PS417_22575 at 4888.729 kb on - strand, within PS417_22575 at 4888.826 kb on - strand, within PS417_22575 at 4889.072 kb on + strand, within PS417_22575 at 4889.073 kb on - strand, within PS417_22575 at 4889.108 kb on + strand, within PS417_22575 at 4889.299 kb on + strand at 4889.299 kb on + strand at 4889.299 kb on + strand at 4889.366 kb on + strand at 4889.397 kb on - strand at 4889.778 kb on + strand, within PS417_22580 at 4889.778 kb on + strand, within PS417_22580 at 4889.779 kb on - strand, within PS417_22580 at 4889.779 kb on - strand, within PS417_22580 at 4890.042 kb on - strand, within PS417_22580 at 4890.042 kb on - strand, within PS417_22580 at 4890.422 kb on + strand, within PS417_22585 at 4890.422 kb on + strand, within PS417_22585 at 4890.473 kb on + strand, within PS417_22585 at 4890.516 kb on + strand, within PS417_22585 at 4890.517 kb on - strand, within PS417_22585 at 4890.617 kb on + strand, within PS417_22585 at 4890.618 kb on - strand, within PS417_22585 at 4890.639 kb on - strand, within PS417_22585 at 4890.683 kb on + strand, within PS417_22585 at 4890.683 kb on + strand, within PS417_22585 at 4890.683 kb on + strand, within PS417_22585 at 4890.683 kb on + strand, within PS417_22585 at 4890.683 kb on + strand, within PS417_22585 at 4890.684 kb on - strand, within PS417_22585 at 4890.684 kb on - strand at 4890.756 kb on - strand, within PS417_22585 at 4890.756 kb on - strand, within PS417_22585 at 4890.758 kb on + strand, within PS417_22585 at 4890.758 kb on + strand, within PS417_22585 at 4890.758 kb on + strand, within PS417_22585 at 4890.759 kb on - strand, within PS417_22585 at 4890.759 kb on - strand, within PS417_22585 at 4891.077 kb on + strand, within PS417_22585 at 4891.078 kb on - strand, within PS417_22585 at 4891.109 kb on + strand, within PS417_22585 at 4891.109 kb on + strand, within PS417_22585 at 4891.110 kb on - strand, within PS417_22585 at 4891.110 kb on - strand, within PS417_22585 at 4891.110 kb on - strand, within PS417_22585 at 4891.148 kb on + strand at 4891.149 kb on - strand at 4891.187 kb on + strand at 4891.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 4,888,571 + PS417_22575 0.43 -0.4 4,888,572 - PS417_22575 0.43 -1.1 4,888,697 + PS417_22575 0.51 -0.5 4,888,728 + PS417_22575 0.54 -3.2 4,888,729 - PS417_22575 0.54 -0.4 4,888,729 - PS417_22575 0.54 -1.0 4,888,729 - PS417_22575 0.54 +0.4 4,888,729 - PS417_22575 0.54 -1.1 4,888,826 - PS417_22575 0.60 +0.4 4,889,072 + PS417_22575 0.78 -1.9 4,889,073 - PS417_22575 0.78 -0.4 4,889,108 + PS417_22575 0.80 -0.0 4,889,299 + -1.2 4,889,299 + -2.0 4,889,299 + -1.7 4,889,366 + -1.4 4,889,397 - -0.3 4,889,778 + PS417_22580 0.32 -1.6 4,889,778 + PS417_22580 0.32 -0.4 4,889,779 - PS417_22580 0.32 -0.6 4,889,779 - PS417_22580 0.32 -0.8 4,890,042 - PS417_22580 0.70 -0.3 4,890,042 - PS417_22580 0.70 -1.4 4,890,422 + PS417_22585 0.18 -1.0 4,890,422 + PS417_22585 0.18 -1.5 4,890,473 + PS417_22585 0.23 -0.2 4,890,516 + PS417_22585 0.27 -0.4 4,890,517 - PS417_22585 0.27 +0.2 4,890,617 + PS417_22585 0.38 +0.7 4,890,618 - PS417_22585 0.38 +0.1 4,890,639 - PS417_22585 0.40 -0.7 4,890,683 + PS417_22585 0.44 +0.4 4,890,683 + PS417_22585 0.44 -2.1 4,890,683 + PS417_22585 0.44 -1.3 4,890,683 + PS417_22585 0.44 +0.7 4,890,683 + PS417_22585 0.44 -0.3 4,890,684 - PS417_22585 0.44 -0.5 4,890,684 - +3.7 4,890,756 - PS417_22585 0.52 -0.4 4,890,756 - PS417_22585 0.52 +0.0 4,890,758 + PS417_22585 0.52 -0.4 4,890,758 + PS417_22585 0.52 +0.6 4,890,758 + PS417_22585 0.52 -0.2 4,890,759 - PS417_22585 0.52 -0.7 4,890,759 - PS417_22585 0.52 -0.6 4,891,077 + PS417_22585 0.85 +0.5 4,891,078 - PS417_22585 0.85 +1.1 4,891,109 + PS417_22585 0.88 -1.6 4,891,109 + PS417_22585 0.88 -1.8 4,891,110 - PS417_22585 0.88 -0.1 4,891,110 - PS417_22585 0.88 +0.8 4,891,110 - PS417_22585 0.88 -0.2 4,891,148 + -1.5 4,891,149 - -1.6 4,891,187 + +0.2 4,891,188 - +1.2
Or see this region's nucleotide sequence