Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13390 and PS417_13395 are separated by 107 nucleotides PS417_13395 and PS417_13400 are separated by 65 nucleotides PS417_13400 and PS417_13405 are separated by 218 nucleotides
PS417_13390: PS417_13390 - GntR family transcriptional regulator, at 2,944,127 to 2,945,533
_13390
PS417_13395: PS417_13395 - phosphoglucomutase, at 2,945,641 to 2,947,284
_13395
PS417_13400: PS417_13400 - pirin, at 2,947,350 to 2,948,045
_13400
PS417_13405: PS417_13405 - helicase UvrD, at 2,948,264 to 2,950,711
_13405
Position (kb)
2945
2946
2947
2948 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2944.659 kb on + strand, within PS417_13390 at 2944.681 kb on - strand, within PS417_13390 at 2944.938 kb on - strand, within PS417_13390 at 2945.085 kb on - strand, within PS417_13390 at 2945.085 kb on - strand, within PS417_13390 at 2945.232 kb on + strand, within PS417_13390 at 2945.294 kb on + strand at 2945.295 kb on - strand, within PS417_13390 at 2945.361 kb on + strand, within PS417_13390 at 2945.559 kb on + strand at 2945.637 kb on - strand at 2945.717 kb on - strand at 2945.719 kb on + strand at 2945.720 kb on - strand at 2945.720 kb on - strand at 2945.841 kb on + strand, within PS417_13395 at 2945.842 kb on - strand, within PS417_13395 at 2945.842 kb on - strand, within PS417_13395 at 2946.028 kb on + strand, within PS417_13395 at 2946.029 kb on - strand, within PS417_13395 at 2946.112 kb on + strand, within PS417_13395 at 2946.112 kb on + strand, within PS417_13395 at 2946.113 kb on - strand at 2946.113 kb on - strand, within PS417_13395 at 2946.263 kb on - strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.274 kb on + strand, within PS417_13395 at 2946.275 kb on - strand, within PS417_13395 at 2946.275 kb on - strand, within PS417_13395 at 2946.275 kb on - strand, within PS417_13395 at 2946.275 kb on - strand, within PS417_13395 at 2946.275 kb on - strand, within PS417_13395 at 2946.497 kb on - strand, within PS417_13395 at 2946.617 kb on - strand, within PS417_13395 at 2946.637 kb on + strand, within PS417_13395 at 2946.746 kb on - strand, within PS417_13395 at 2946.944 kb on - strand, within PS417_13395 at 2947.189 kb on + strand at 2947.189 kb on + strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.190 kb on - strand at 2947.198 kb on + strand at 2947.199 kb on - strand at 2947.199 kb on - strand at 2947.199 kb on - strand at 2947.283 kb on - strand at 2947.283 kb on - strand at 2947.296 kb on + strand at 2947.490 kb on - strand, within PS417_13400 at 2947.736 kb on - strand, within PS417_13400 at 2947.776 kb on + strand, within PS417_13400 at 2947.776 kb on + strand, within PS417_13400 at 2947.777 kb on - strand, within PS417_13400 at 2947.777 kb on - strand, within PS417_13400 at 2947.846 kb on + strand, within PS417_13400 at 2947.846 kb on + strand, within PS417_13400 at 2947.847 kb on - strand, within PS417_13400 at 2947.847 kb on - strand, within PS417_13400 at 2947.905 kb on - strand, within PS417_13400 at 2948.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 2,944,659 + PS417_13390 0.38 -0.5 2,944,681 - PS417_13390 0.39 +1.6 2,944,938 - PS417_13390 0.58 -0.3 2,945,085 - PS417_13390 0.68 +0.6 2,945,085 - PS417_13390 0.68 +0.3 2,945,232 + PS417_13390 0.79 +0.0 2,945,294 + +0.6 2,945,295 - PS417_13390 0.83 -0.1 2,945,361 + PS417_13390 0.88 +0.2 2,945,559 + +0.5 2,945,637 - +1.0 2,945,717 - +1.2 2,945,719 + +1.1 2,945,720 - +1.6 2,945,720 - +0.4 2,945,841 + PS417_13395 0.12 +1.8 2,945,842 - PS417_13395 0.12 +1.4 2,945,842 - PS417_13395 0.12 +0.2 2,946,028 + PS417_13395 0.24 +1.2 2,946,029 - PS417_13395 0.24 +0.4 2,946,112 + PS417_13395 0.29 +1.2 2,946,112 + PS417_13395 0.29 +1.4 2,946,113 - +1.2 2,946,113 - PS417_13395 0.29 +1.5 2,946,263 - PS417_13395 0.38 +1.5 2,946,274 + PS417_13395 0.39 +0.8 2,946,274 + PS417_13395 0.39 +1.6 2,946,274 + PS417_13395 0.39 +0.7 2,946,274 + PS417_13395 0.39 +0.8 2,946,274 + PS417_13395 0.39 +1.4 2,946,274 + PS417_13395 0.39 +1.9 2,946,275 - PS417_13395 0.39 +1.4 2,946,275 - PS417_13395 0.39 +0.9 2,946,275 - PS417_13395 0.39 +1.6 2,946,275 - PS417_13395 0.39 +1.7 2,946,275 - PS417_13395 0.39 +2.7 2,946,497 - PS417_13395 0.52 +1.1 2,946,617 - PS417_13395 0.59 -0.4 2,946,637 + PS417_13395 0.61 +0.8 2,946,746 - PS417_13395 0.67 +1.7 2,946,944 - PS417_13395 0.79 +1.2 2,947,189 + +1.8 2,947,189 + +1.4 2,947,190 - -0.2 2,947,190 - +1.3 2,947,190 - +1.1 2,947,190 - -0.1 2,947,190 - +1.6 2,947,190 - +1.2 2,947,190 - +1.0 2,947,198 + +4.0 2,947,199 - +2.1 2,947,199 - +2.8 2,947,199 - +1.8 2,947,283 - -1.8 2,947,283 - -1.5 2,947,296 + +0.5 2,947,490 - PS417_13400 0.20 -0.3 2,947,736 - PS417_13400 0.55 -0.1 2,947,776 + PS417_13400 0.61 +1.1 2,947,776 + PS417_13400 0.61 +0.3 2,947,777 - PS417_13400 0.61 +0.3 2,947,777 - PS417_13400 0.61 -2.6 2,947,846 + PS417_13400 0.71 -2.2 2,947,846 + PS417_13400 0.71 +1.4 2,947,847 - PS417_13400 0.71 +0.5 2,947,847 - PS417_13400 0.71 +0.3 2,947,905 - PS417_13400 0.80 -1.2 2,948,068 + -1.8
Or see this region's nucleotide sequence