Strain Fitness in Pseudomonas simiae WCS417 around PS417_08655

Experiment: Wcs_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08640 and PS417_08645 are separated by 156 nucleotidesPS417_08645 and PS417_08650 are separated by 74 nucleotidesPS417_08650 and PS417_08655 are separated by 73 nucleotidesPS417_08655 and PS417_08660 are separated by 54 nucleotidesPS417_08660 and PS417_08665 are separated by 79 nucleotides PS417_08640: PS417_08640 - sodium:proton antiporter, at 1,886,806 to 1,888,536 _08640 PS417_08645: PS417_08645 - glutaredoxin, at 1,888,693 to 1,888,929 _08645 PS417_08650: PS417_08650 - transcriptional regulator, at 1,889,004 to 1,889,339 _08650 PS417_08655: PS417_08655 - pseudouridine synthase, at 1,889,413 to 1,890,303 _08655 PS417_08660: PS417_08660 - hypothetical protein, at 1,890,358 to 1,890,579 _08660 PS417_08665: PS417_08665 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,890,659 to 1,891,261 _08665 Position (kb) 1889 1890 1891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1888.448 kb on + strandat 1888.448 kb on + strandat 1888.449 kb on - strandat 1888.593 kb on - strandat 1888.594 kb on + strandat 1888.595 kb on - strandat 1888.655 kb on + strandat 1888.656 kb on - strandat 1888.668 kb on + strandat 1888.712 kb on + strandat 1888.713 kb on - strandat 1888.713 kb on - strandat 1888.715 kb on + strandat 1888.716 kb on - strandat 1888.835 kb on - strand, within PS417_08645at 1888.955 kb on + strandat 1889.224 kb on - strand, within PS417_08650at 1889.232 kb on + strand, within PS417_08650at 1889.350 kb on - strandat 1889.461 kb on + strandat 1889.462 kb on - strandat 1889.462 kb on - strandat 1889.462 kb on - strandat 1889.605 kb on + strand, within PS417_08655at 1889.626 kb on + strand, within PS417_08655at 1889.626 kb on + strand, within PS417_08655at 1889.627 kb on - strand, within PS417_08655at 1889.627 kb on - strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.821 kb on - strand, within PS417_08655at 1889.921 kb on - strand, within PS417_08655at 1889.921 kb on - strand, within PS417_08655at 1889.970 kb on + strand, within PS417_08655at 1889.971 kb on - strand, within PS417_08655at 1889.971 kb on - strand, within PS417_08655at 1890.150 kb on + strand, within PS417_08655at 1890.150 kb on + strand, within PS417_08655at 1890.156 kb on + strand, within PS417_08655at 1890.302 kb on - strandat 1890.353 kb on - strandat 1890.359 kb on + strandat 1890.359 kb on + strandat 1890.359 kb on + strandat 1890.360 kb on - strandat 1890.360 kb on - strandat 1890.453 kb on - strand, within PS417_08660at 1890.599 kb on + strandat 1890.607 kb on - strandat 1890.609 kb on + strandat 1890.700 kb on + strandat 1890.704 kb on - strandat 1890.704 kb on - strandat 1890.704 kb on - strandat 1890.704 kb on - strandat 1890.761 kb on + strand, within PS417_08665at 1890.809 kb on + strand, within PS417_08665at 1891.071 kb on + strand, within PS417_08665at 1891.071 kb on + strand, within PS417_08665at 1891.072 kb on - strand, within PS417_08665at 1891.072 kb on - strand, within PS417_08665at 1891.195 kb on + strand, within PS417_08665at 1891.299 kb on + strandat 1891.300 kb on - strandat 1891.301 kb on + strandat 1891.301 kb on + strandat 1891.302 kb on - strandat 1891.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_0.1
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1,888,448 + -0.9
1,888,448 + +1.7
1,888,449 - +0.2
1,888,593 - -1.4
1,888,594 + +0.3
1,888,595 - -0.2
1,888,655 + -0.1
1,888,656 - +1.1
1,888,668 + +2.0
1,888,712 + +0.1
1,888,713 - -0.9
1,888,713 - -0.5
1,888,715 + -1.4
1,888,716 - +0.3
1,888,835 - PS417_08645 0.60 -1.4
1,888,955 + +0.5
1,889,224 - PS417_08650 0.65 -1.1
1,889,232 + PS417_08650 0.68 -1.8
1,889,350 - +1.9
1,889,461 + +0.3
1,889,462 - +0.4
1,889,462 - -0.2
1,889,462 - +1.2
1,889,605 + PS417_08655 0.22 -0.6
1,889,626 + PS417_08655 0.24 -0.0
1,889,626 + PS417_08655 0.24 -0.5
1,889,627 - PS417_08655 0.24 +0.1
1,889,627 - PS417_08655 0.24 +0.1
1,889,629 + PS417_08655 0.24 -0.5
1,889,629 + PS417_08655 0.24 +0.4
1,889,629 + PS417_08655 0.24 -0.2
1,889,629 + PS417_08655 0.24 -0.4
1,889,821 - PS417_08655 0.46 +1.2
1,889,921 - PS417_08655 0.57 -0.5
1,889,921 - PS417_08655 0.57 -0.9
1,889,970 + PS417_08655 0.63 -0.2
1,889,971 - PS417_08655 0.63 -3.3
1,889,971 - PS417_08655 0.63 +0.2
1,890,150 + PS417_08655 0.83 +0.6
1,890,150 + PS417_08655 0.83 +2.4
1,890,156 + PS417_08655 0.83 +0.1
1,890,302 - -0.1
1,890,353 - -0.1
1,890,359 + +0.4
1,890,359 + -0.2
1,890,359 + +0.4
1,890,360 - -0.1
1,890,360 - +0.0
1,890,453 - PS417_08660 0.43 +0.5
1,890,599 + -0.5
1,890,607 - -2.1
1,890,609 + +0.8
1,890,700 + -1.2
1,890,704 - -0.4
1,890,704 - -0.6
1,890,704 - +0.4
1,890,704 - -0.7
1,890,761 + PS417_08665 0.17 -0.5
1,890,809 + PS417_08665 0.25 -2.6
1,891,071 + PS417_08665 0.68 -0.1
1,891,071 + PS417_08665 0.68 -0.2
1,891,072 - PS417_08665 0.68 -0.8
1,891,072 - PS417_08665 0.68 -1.6
1,891,195 + PS417_08665 0.89 -0.6
1,891,299 + -0.8
1,891,300 - +0.1
1,891,301 + -1.8
1,891,301 + -0.1
1,891,302 - +0.6
1,891,302 - +0.1

Or see this region's nucleotide sequence