Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07430 and PS417_07435 are separated by 78 nucleotides PS417_07435 and PS417_07440 overlap by 4 nucleotides PS417_07440 and PS417_07445 are separated by 68 nucleotides
PS417_07430: PS417_07430 - hypothetical protein, at 1,635,960 to 1,636,646
_07430
PS417_07435: PS417_07435 - hypothetical protein, at 1,636,725 to 1,637,000
_07435
PS417_07440: PS417_07440 - cyclic nucleotide-binding protein, at 1,636,997 to 1,637,482
_07440
PS417_07445: PS417_07445 - peptidase S9, at 1,637,551 to 1,639,593
_07445
Position (kb)
1636
1637
1638 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1636.687 kb on + strand at 1636.687 kb on + strand at 1636.741 kb on + strand at 1636.999 kb on - strand at 1637.016 kb on - strand at 1637.056 kb on + strand, within PS417_07440 at 1637.061 kb on - strand, within PS417_07440 at 1637.192 kb on + strand, within PS417_07440 at 1637.368 kb on - strand, within PS417_07440 at 1637.450 kb on + strand at 1637.451 kb on - strand at 1637.543 kb on + strand at 1637.552 kb on + strand at 1637.552 kb on + strand at 1637.553 kb on - strand at 1637.596 kb on + strand at 1637.596 kb on + strand at 1637.596 kb on + strand at 1637.596 kb on + strand at 1637.596 kb on + strand at 1637.597 kb on - strand at 1637.597 kb on - strand at 1637.597 kb on - strand at 1637.597 kb on - strand at 1637.605 kb on + strand at 1637.605 kb on + strand at 1637.605 kb on + strand at 1637.748 kb on - strand at 1637.807 kb on + strand, within PS417_07445 at 1637.807 kb on + strand, within PS417_07445 at 1637.808 kb on - strand, within PS417_07445 at 1638.227 kb on + strand at 1638.228 kb on - strand, within PS417_07445 at 1638.249 kb on - strand, within PS417_07445 at 1638.348 kb on - strand, within PS417_07445
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 1,636,687 + -0.1 1,636,687 + -0.9 1,636,741 + -0.4 1,636,999 - -0.5 1,637,016 - +0.5 1,637,056 + PS417_07440 0.12 -0.8 1,637,061 - PS417_07440 0.13 -1.6 1,637,192 + PS417_07440 0.40 -0.8 1,637,368 - PS417_07440 0.76 -0.4 1,637,450 + +0.2 1,637,451 - +1.3 1,637,543 + +0.2 1,637,552 + +0.5 1,637,552 + +1.5 1,637,553 - +2.2 1,637,596 + -0.6 1,637,596 + +0.3 1,637,596 + +2.2 1,637,596 + +2.2 1,637,596 + +0.2 1,637,597 - -0.6 1,637,597 - -0.1 1,637,597 - +0.1 1,637,597 - +1.2 1,637,605 + +0.0 1,637,605 + +1.5 1,637,605 + +0.4 1,637,748 - -0.0 1,637,807 + PS417_07445 0.13 +2.5 1,637,807 + PS417_07445 0.13 +0.3 1,637,808 - PS417_07445 0.13 -0.5 1,638,227 + -2.5 1,638,228 - PS417_07445 0.33 -0.4 1,638,249 - PS417_07445 0.34 +1.1 1,638,348 - PS417_07445 0.39 -0.6
Or see this region's nucleotide sequence