Experiment: Wcs_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27775 and PS417_27780 are separated by 5 nucleotides PS417_27780 and PS417_27785 are separated by 264 nucleotides PS417_27785 and PS417_27790 are separated by 19 nucleotides
PS417_27775: PS417_27775 - phosphopantothenoylcysteine decarboxylase, at 5,989,772 to 5,990,980
_27775
PS417_27780: PS417_27780 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,990,986 to 5,991,441
_27780
PS417_27785: PS417_27785 - phosphoglucomutase, at 5,991,706 to 5,993,103
_27785
PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028
_27790
Position (kb) 5991
5992
5993
5994 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5991.444 kb on - strand at 5991.630 kb on + strand at 5991.631 kb on - strand at 5991.761 kb on - strand at 5991.982 kb on + strand, within PS417_27785 at 5991.998 kb on + strand, within PS417_27785 at 5991.999 kb on - strand, within PS417_27785 at 5991.999 kb on - strand, within PS417_27785 at 5992.186 kb on + strand, within PS417_27785 at 5992.616 kb on + strand, within PS417_27785 at 5992.737 kb on + strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.741 kb on + strand, within PS417_27785 at 5992.742 kb on - strand, within PS417_27785 at 5992.821 kb on + strand, within PS417_27785 at 5993.093 kb on + strand at 5993.094 kb on - strand at 5993.195 kb on + strand at 5993.196 kb on - strand at 5993.867 kb on + strand, within PS417_27790 at 5994.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_1 remove 5,991,444 - -0.7 5,991,630 + +0.1 5,991,631 - +0.6 5,991,761 - -0.4 5,991,982 + PS417_27785 0.20 -0.4 5,991,998 + PS417_27785 0.21 -2.1 5,991,999 - PS417_27785 0.21 -0.3 5,991,999 - PS417_27785 0.21 -0.1 5,992,186 + PS417_27785 0.34 +3.4 5,992,616 + PS417_27785 0.65 +0.1 5,992,737 + PS417_27785 0.74 -0.8 5,992,738 - PS417_27785 0.74 -0.9 5,992,738 - PS417_27785 0.74 -1.2 5,992,738 - PS417_27785 0.74 -1.2 5,992,741 + PS417_27785 0.74 -0.7 5,992,742 - PS417_27785 0.74 +1.7 5,992,821 + PS417_27785 0.80 -0.1 5,993,093 + +3.7 5,993,094 - -1.2 5,993,195 + +1.4 5,993,196 - -2.4 5,993,867 + PS417_27790 0.82 +0.1 5,994,027 - +0.8
Or see this region's nucleotide sequence