Strain Fitness in Pseudomonas simiae WCS417 around PS417_19020

Experiment: Wcs_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19015 and PS417_19020 are separated by 123 nucleotidesPS417_19020 and PS417_19025 overlap by 4 nucleotides PS417_19015: PS417_19015 - LysR family transcriptional regulator, at 4,115,164 to 4,116,060 _19015 PS417_19020: PS417_19020 - dimethylmenaquinone methyltransferase, at 4,116,184 to 4,116,849 _19020 PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051 _19025 Position (kb) 4116 4117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4115.262 kb on - strand, within PS417_19015at 4115.262 kb on - strand, within PS417_19015at 4115.262 kb on - strand, within PS417_19015at 4115.348 kb on + strand, within PS417_19015at 4115.348 kb on + strand, within PS417_19015at 4115.454 kb on - strand, within PS417_19015at 4115.498 kb on + strand, within PS417_19015at 4115.612 kb on + strand, within PS417_19015at 4115.613 kb on - strand, within PS417_19015at 4115.712 kb on - strand, within PS417_19015at 4115.825 kb on - strand, within PS417_19015at 4115.825 kb on - strand, within PS417_19015at 4116.069 kb on + strandat 4116.135 kb on - strandat 4116.135 kb on - strandat 4116.394 kb on + strand, within PS417_19020at 4116.428 kb on + strand, within PS417_19020at 4116.429 kb on - strand, within PS417_19020at 4116.429 kb on - strandat 4116.601 kb on + strand, within PS417_19020at 4116.728 kb on + strand, within PS417_19020at 4117.038 kb on + strand, within PS417_19025at 4117.038 kb on + strand, within PS417_19025at 4117.114 kb on - strandat 4117.161 kb on + strand, within PS417_19025at 4117.161 kb on + strand, within PS417_19025at 4117.161 kb on + strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.162 kb on - strand, within PS417_19025at 4117.390 kb on - strandat 4117.426 kb on + strand, within PS417_19025at 4117.427 kb on - strand, within PS417_19025at 4117.467 kb on + strandat 4117.569 kb on + strand, within PS417_19025at 4117.655 kb on + strand, within PS417_19025at 4117.655 kb on + strand, within PS417_19025at 4117.701 kb on - strand, within PS417_19025at 4117.741 kb on - strand, within PS417_19025at 4117.821 kb on + strand, within PS417_19025at 4117.821 kb on + strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025at 4117.822 kb on - strand, within PS417_19025

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_1
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4,115,262 - PS417_19015 0.11 -1.8
4,115,262 - PS417_19015 0.11 +0.4
4,115,262 - PS417_19015 0.11 -0.2
4,115,348 + PS417_19015 0.21 +0.3
4,115,348 + PS417_19015 0.21 -1.6
4,115,454 - PS417_19015 0.32 +0.4
4,115,498 + PS417_19015 0.37 -1.3
4,115,612 + PS417_19015 0.50 +0.4
4,115,613 - PS417_19015 0.50 -1.1
4,115,712 - PS417_19015 0.61 -0.1
4,115,825 - PS417_19015 0.74 +0.0
4,115,825 - PS417_19015 0.74 +0.7
4,116,069 + +0.6
4,116,135 - +0.7
4,116,135 - +0.7
4,116,394 + PS417_19020 0.32 +0.5
4,116,428 + PS417_19020 0.37 -2.8
4,116,429 - PS417_19020 0.37 -2.3
4,116,429 - +0.7
4,116,601 + PS417_19020 0.63 -1.3
4,116,728 + PS417_19020 0.82 -0.4
4,117,038 + PS417_19025 0.16 -1.6
4,117,038 + PS417_19025 0.16 +0.2
4,117,114 - +1.7
4,117,161 + PS417_19025 0.26 +0.5
4,117,161 + PS417_19025 0.26 -0.1
4,117,161 + PS417_19025 0.26 -0.7
4,117,162 - PS417_19025 0.26 +1.7
4,117,162 - PS417_19025 0.26 -2.0
4,117,162 - PS417_19025 0.26 +0.1
4,117,162 - PS417_19025 0.26 -0.1
4,117,162 - PS417_19025 0.26 -0.5
4,117,390 - +2.7
4,117,426 + PS417_19025 0.48 -0.3
4,117,427 - PS417_19025 0.48 -0.7
4,117,467 + +1.7
4,117,569 + PS417_19025 0.60 -0.9
4,117,655 + PS417_19025 0.67 -1.3
4,117,655 + PS417_19025 0.67 +0.2
4,117,701 - PS417_19025 0.71 -0.4
4,117,741 - PS417_19025 0.74 -2.0
4,117,821 + PS417_19025 0.81 -0.3
4,117,821 + PS417_19025 0.81 +0.4
4,117,822 - PS417_19025 0.81 +1.7
4,117,822 - PS417_19025 0.81 +1.7
4,117,822 - PS417_19025 0.81 -1.0
4,117,822 - PS417_19025 0.81 -0.7

Or see this region's nucleotide sequence