Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3080 and Atu3081 are separated by 2 nucleotides Atu3081 and Atu8183 are separated by 76 nucleotides Atu8183 and Atu3083 overlap by 4 nucleotides Atu3083 and Atu3084 overlap by 4 nucleotides
Atu3080: Atu3080 - hypothetical protein, at 86,466 to 87,689
Atu3080
Atu3081: Atu3081 - hypothetical protein, at 87,692 to 89,185
Atu3081
Atu8183: Atu8183 - hypothetical protein, at 89,262 to 89,711
Atu8183
Atu3083: Atu3083 - hypothetical protein, at 89,708 to 90,148
Atu3083
Atu3084: Atu3084 - RNA polymerase sigma factor, at 90,145 to 90,687
Atu3084
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.733 kb on - strand, within Atu3080 at 86.766 kb on + strand, within Atu3080 at 86.769 kb on - strand, within Atu3080 at 86.791 kb on + strand, within Atu3080 at 86.908 kb on - strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.936 kb on + strand, within Atu3080 at 86.960 kb on - strand, within Atu3080 at 86.965 kb on - strand, within Atu3080 at 86.965 kb on - strand, within Atu3080 at 87.001 kb on - strand, within Atu3080 at 87.027 kb on + strand, within Atu3080 at 87.027 kb on + strand, within Atu3080 at 87.078 kb on - strand, within Atu3080 at 87.314 kb on - strand, within Atu3080 at 87.360 kb on + strand, within Atu3080 at 87.360 kb on + strand, within Atu3080 at 87.368 kb on - strand, within Atu3080 at 87.368 kb on - strand, within Atu3080 at 87.375 kb on + strand, within Atu3080 at 87.383 kb on - strand, within Atu3080 at 87.384 kb on - strand, within Atu3080 at 87.439 kb on + strand, within Atu3080 at 87.496 kb on - strand, within Atu3080 at 87.497 kb on - strand, within Atu3080 at 87.777 kb on - strand at 87.903 kb on - strand, within Atu3081 at 87.931 kb on + strand, within Atu3081 at 87.931 kb on + strand, within Atu3081 at 87.945 kb on + strand, within Atu3081 at 87.985 kb on + strand, within Atu3081 at 88.060 kb on - strand, within Atu3081 at 88.125 kb on + strand, within Atu3081 at 88.187 kb on - strand, within Atu3081 at 88.330 kb on + strand, within Atu3081 at 88.354 kb on + strand, within Atu3081 at 88.439 kb on + strand, within Atu3081 at 88.655 kb on + strand, within Atu3081 at 88.655 kb on + strand, within Atu3081 at 88.665 kb on + strand, within Atu3081 at 88.665 kb on + strand, within Atu3081 at 88.671 kb on - strand, within Atu3081 at 88.701 kb on + strand, within Atu3081 at 88.706 kb on + strand, within Atu3081 at 88.709 kb on - strand, within Atu3081 at 88.844 kb on + strand, within Atu3081 at 88.845 kb on + strand, within Atu3081 at 88.883 kb on - strand, within Atu3081 at 88.893 kb on - strand, within Atu3081 at 88.900 kb on - strand, within Atu3081 at 88.916 kb on - strand, within Atu3081 at 88.959 kb on + strand, within Atu3081 at 88.973 kb on + strand, within Atu3081 at 89.051 kb on + strand at 89.139 kb on - strand at 89.255 kb on + strand at 89.303 kb on - strand at 89.413 kb on + strand, within Atu8183 at 89.413 kb on - strand, within Atu8183 at 89.431 kb on - strand, within Atu8183 at 89.436 kb on - strand, within Atu8183 at 89.554 kb on + strand, within Atu8183 at 89.562 kb on - strand, within Atu8183 at 89.575 kb on - strand, within Atu8183 at 89.611 kb on - strand, within Atu8183 at 89.683 kb on - strand at 89.731 kb on + strand at 89.758 kb on + strand, within Atu3083 at 89.825 kb on - strand, within Atu3083 at 89.830 kb on - strand, within Atu3083 at 89.955 kb on - strand, within Atu3083 at 90.030 kb on + strand, within Atu3083 at 90.038 kb on - strand, within Atu3083 at 90.058 kb on + strand, within Atu3083 at 90.063 kb on + strand, within Atu3083
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 86,733 - Atu3080 0.22 +0.8 86,766 + Atu3080 0.25 +0.6 86,769 - Atu3080 0.25 +0.2 86,791 + Atu3080 0.27 +0.3 86,908 - Atu3080 0.36 +1.6 86,936 + Atu3080 0.38 +2.0 86,936 + Atu3080 0.38 +0.6 86,936 + Atu3080 0.38 +0.3 86,960 - Atu3080 0.40 -0.1 86,965 - Atu3080 0.41 -0.3 86,965 - Atu3080 0.41 -0.0 87,001 - Atu3080 0.44 -0.8 87,027 + Atu3080 0.46 +0.8 87,027 + Atu3080 0.46 +0.9 87,078 - Atu3080 0.50 -0.3 87,314 - Atu3080 0.69 -0.1 87,360 + Atu3080 0.73 +0.1 87,360 + Atu3080 0.73 +0.4 87,368 - Atu3080 0.74 +0.1 87,368 - Atu3080 0.74 +0.3 87,375 + Atu3080 0.74 -0.5 87,383 - Atu3080 0.75 +0.8 87,384 - Atu3080 0.75 +1.1 87,439 + Atu3080 0.79 +1.2 87,496 - Atu3080 0.84 +0.5 87,497 - Atu3080 0.84 +1.4 87,777 - +0.3 87,903 - Atu3081 0.14 -0.2 87,931 + Atu3081 0.16 +0.1 87,931 + Atu3081 0.16 +0.6 87,945 + Atu3081 0.17 +0.4 87,985 + Atu3081 0.20 -0.3 88,060 - Atu3081 0.25 +0.5 88,125 + Atu3081 0.29 +0.1 88,187 - Atu3081 0.33 +0.7 88,330 + Atu3081 0.43 +0.9 88,354 + Atu3081 0.44 -0.8 88,439 + Atu3081 0.50 -0.0 88,655 + Atu3081 0.64 +0.9 88,655 + Atu3081 0.64 +1.8 88,665 + Atu3081 0.65 -0.4 88,665 + Atu3081 0.65 -0.3 88,671 - Atu3081 0.66 +0.4 88,701 + Atu3081 0.68 -0.2 88,706 + Atu3081 0.68 -0.0 88,709 - Atu3081 0.68 +0.1 88,844 + Atu3081 0.77 +0.2 88,845 + Atu3081 0.77 +1.1 88,883 - Atu3081 0.80 +0.9 88,893 - Atu3081 0.80 +0.1 88,900 - Atu3081 0.81 +0.3 88,916 - Atu3081 0.82 +1.2 88,959 + Atu3081 0.85 -0.0 88,973 + Atu3081 0.86 +0.5 89,051 + -0.0 89,139 - +0.5 89,255 + +1.6 89,303 - +1.0 89,413 + Atu8183 0.34 -0.3 89,413 - Atu8183 0.34 -0.6 89,431 - Atu8183 0.38 -0.4 89,436 - Atu8183 0.39 +2.0 89,554 + Atu8183 0.65 +0.4 89,562 - Atu8183 0.67 -0.0 89,575 - Atu8183 0.70 -0.4 89,611 - Atu8183 0.78 -2.0 89,683 - -1.0 89,731 + -0.0 89,758 + Atu3083 0.11 +0.0 89,825 - Atu3083 0.27 +0.5 89,830 - Atu3083 0.28 -0.6 89,955 - Atu3083 0.56 -0.0 90,030 + Atu3083 0.73 -0.6 90,038 - Atu3083 0.75 +0.1 90,058 + Atu3083 0.79 -0.8 90,063 + Atu3083 0.80 -1.8
Or see this region's nucleotide sequence