Strain Fitness in Agrobacterium fabrum C58 around Atu3080

Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3079 and Atu3080 are separated by 102 nucleotidesAtu3080 and Atu3081 are separated by 2 nucleotides Atu3079: Atu3079 - chromate transport protein, at 85,146 to 86,363 Atu3079 Atu3080: Atu3080 - hypothetical protein, at 86,466 to 87,689 Atu3080 Atu3081: Atu3081 - hypothetical protein, at 87,692 to 89,185 Atu3081 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1 2 3at 85.467 kb on - strand, within Atu3079at 85.473 kb on + strand, within Atu3079at 85.503 kb on + strand, within Atu3079at 85.504 kb on - strand, within Atu3079at 85.608 kb on + strand, within Atu3079at 85.690 kb on + strand, within Atu3079at 85.693 kb on - strand, within Atu3079at 85.698 kb on - strand, within Atu3079at 85.721 kb on + strand, within Atu3079at 85.782 kb on + strand, within Atu3079at 85.782 kb on + strand, within Atu3079at 85.814 kb on - strand, within Atu3079at 85.944 kb on + strand, within Atu3079at 85.990 kb on - strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.108 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.113 kb on + strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.116 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.121 kb on - strand, within Atu3079at 86.129 kb on + strand, within Atu3079at 86.165 kb on + strand, within Atu3079at 86.167 kb on + strand, within Atu3079at 86.225 kb on + strand, within Atu3079at 86.267 kb on + strandat 86.335 kb on + strandat 86.343 kb on - strandat 86.343 kb on - strandat 86.374 kb on + strandat 86.379 kb on + strandat 86.462 kb on + strandat 86.462 kb on + strandat 86.470 kb on - strandat 86.480 kb on - strandat 86.496 kb on - strandat 86.501 kb on - strandat 86.506 kb on - strandat 86.523 kb on + strandat 86.560 kb on - strandat 86.631 kb on + strand, within Atu3080at 86.631 kb on + strand, within Atu3080at 86.631 kb on + strand, within Atu3080at 86.639 kb on - strand, within Atu3080at 86.639 kb on - strand, within Atu3080at 86.733 kb on - strand, within Atu3080at 86.766 kb on + strand, within Atu3080at 86.769 kb on - strand, within Atu3080at 86.791 kb on + strand, within Atu3080at 86.908 kb on - strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.936 kb on + strand, within Atu3080at 86.960 kb on - strand, within Atu3080at 86.965 kb on - strand, within Atu3080at 86.965 kb on - strand, within Atu3080at 87.001 kb on - strand, within Atu3080at 87.027 kb on + strand, within Atu3080at 87.027 kb on + strand, within Atu3080at 87.078 kb on - strand, within Atu3080at 87.314 kb on - strand, within Atu3080at 87.360 kb on + strand, within Atu3080at 87.360 kb on + strand, within Atu3080at 87.368 kb on - strand, within Atu3080at 87.368 kb on - strand, within Atu3080at 87.375 kb on + strand, within Atu3080at 87.383 kb on - strand, within Atu3080at 87.384 kb on - strand, within Atu3080at 87.439 kb on + strand, within Atu3080at 87.496 kb on - strand, within Atu3080at 87.497 kb on - strand, within Atu3080at 87.777 kb on - strandat 87.903 kb on - strand, within Atu3081at 87.931 kb on + strand, within Atu3081at 87.931 kb on + strand, within Atu3081at 87.945 kb on + strand, within Atu3081at 87.985 kb on + strand, within Atu3081at 88.060 kb on - strand, within Atu3081at 88.125 kb on + strand, within Atu3081at 88.187 kb on - strand, within Atu3081at 88.330 kb on + strand, within Atu3081at 88.354 kb on + strand, within Atu3081at 88.439 kb on + strand, within Atu3081at 88.655 kb on + strand, within Atu3081at 88.655 kb on + strand, within Atu3081at 88.665 kb on + strand, within Atu3081at 88.665 kb on + strand, within Atu3081at 88.671 kb on - strand, within Atu3081

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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85,467 - Atu3079 0.26 +0.4
85,473 + Atu3079 0.27 +2.8
85,503 + Atu3079 0.29 +1.4
85,504 - Atu3079 0.29 +0.2
85,608 + Atu3079 0.38 +1.2
85,690 + Atu3079 0.45 +0.5
85,693 - Atu3079 0.45 +0.8
85,698 - Atu3079 0.45 +0.5
85,721 + Atu3079 0.47 +0.1
85,782 + Atu3079 0.52 +0.9
85,782 + Atu3079 0.52 +0.1
85,814 - Atu3079 0.55 +0.3
85,944 + Atu3079 0.66 +1.7
85,990 - Atu3079 0.69 -0.4
86,108 + Atu3079 0.79 +1.0
86,108 + Atu3079 0.79 +0.1
86,108 + Atu3079 0.79 +0.7
86,108 + Atu3079 0.79 +0.4
86,113 + Atu3079 0.79 +0.3
86,113 + Atu3079 0.79 +0.6
86,113 + Atu3079 0.79 +1.4
86,113 + Atu3079 0.79 +0.9
86,113 + Atu3079 0.79 +0.1
86,116 - Atu3079 0.80 -0.0
86,116 - Atu3079 0.80 -0.5
86,116 - Atu3079 0.80 -1.1
86,121 - Atu3079 0.80 -0.4
86,121 - Atu3079 0.80 +0.8
86,121 - Atu3079 0.80 +2.3
86,121 - Atu3079 0.80 +0.2
86,129 + Atu3079 0.81 +0.3
86,165 + Atu3079 0.84 +0.2
86,167 + Atu3079 0.84 +0.9
86,225 + Atu3079 0.89 +0.3
86,267 + +0.6
86,335 + +0.0
86,343 - +1.7
86,343 - +0.8
86,374 + -1.0
86,379 + +0.4
86,462 + -0.4
86,462 + -0.3
86,470 - +0.4
86,480 - +2.0
86,496 - +0.8
86,501 - -0.8
86,506 - +0.0
86,523 + +0.1
86,560 - +0.6
86,631 + Atu3080 0.13 +0.4
86,631 + Atu3080 0.13 -0.2
86,631 + Atu3080 0.13 -0.3
86,639 - Atu3080 0.14 -0.7
86,639 - Atu3080 0.14 +0.5
86,733 - Atu3080 0.22 +0.8
86,766 + Atu3080 0.25 +0.6
86,769 - Atu3080 0.25 +0.2
86,791 + Atu3080 0.27 +0.3
86,908 - Atu3080 0.36 +1.6
86,936 + Atu3080 0.38 +2.0
86,936 + Atu3080 0.38 +0.6
86,936 + Atu3080 0.38 +0.3
86,960 - Atu3080 0.40 -0.1
86,965 - Atu3080 0.41 -0.3
86,965 - Atu3080 0.41 -0.0
87,001 - Atu3080 0.44 -0.8
87,027 + Atu3080 0.46 +0.8
87,027 + Atu3080 0.46 +0.9
87,078 - Atu3080 0.50 -0.3
87,314 - Atu3080 0.69 -0.1
87,360 + Atu3080 0.73 +0.1
87,360 + Atu3080 0.73 +0.4
87,368 - Atu3080 0.74 +0.1
87,368 - Atu3080 0.74 +0.3
87,375 + Atu3080 0.74 -0.5
87,383 - Atu3080 0.75 +0.8
87,384 - Atu3080 0.75 +1.1
87,439 + Atu3080 0.79 +1.2
87,496 - Atu3080 0.84 +0.5
87,497 - Atu3080 0.84 +1.4
87,777 - +0.3
87,903 - Atu3081 0.14 -0.2
87,931 + Atu3081 0.16 +0.1
87,931 + Atu3081 0.16 +0.6
87,945 + Atu3081 0.17 +0.4
87,985 + Atu3081 0.20 -0.3
88,060 - Atu3081 0.25 +0.5
88,125 + Atu3081 0.29 +0.1
88,187 - Atu3081 0.33 +0.7
88,330 + Atu3081 0.43 +0.9
88,354 + Atu3081 0.44 -0.8
88,439 + Atu3081 0.50 -0.0
88,655 + Atu3081 0.64 +0.9
88,655 + Atu3081 0.64 +1.8
88,665 + Atu3081 0.65 -0.4
88,665 + Atu3081 0.65 -0.3
88,671 - Atu3081 0.66 +0.4

Or see this region's nucleotide sequence