Experiment: Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5072 and PP_5073 are separated by 67 nucleotides PP_5073 and PP_5074 are separated by 56 nucleotides
PP_5072: PP_5072 - efflux transporter, at 5,788,844 to 5,790,121
_5072
PP_5073: PP_5073 - conserved exported protein of unknown function, at 5,790,189 to 5,790,596
_5073
PP_5074: PP_5074 - Uroporphyrinogen decarboxylase, at 5,790,653 to 5,791,717
_5074
Position (kb) 5790
5791 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5789.242 kb on - strand, within PP_5072 at 5789.303 kb on + strand, within PP_5072 at 5789.303 kb on + strand, within PP_5072 at 5789.303 kb on + strand, within PP_5072 at 5789.304 kb on - strand, within PP_5072 at 5789.304 kb on - strand, within PP_5072 at 5789.304 kb on - strand, within PP_5072 at 5789.304 kb on - strand at 5789.354 kb on + strand, within PP_5072 at 5789.354 kb on + strand, within PP_5072 at 5789.355 kb on - strand, within PP_5072 at 5789.406 kb on + strand, within PP_5072 at 5789.406 kb on + strand, within PP_5072 at 5789.406 kb on + strand, within PP_5072 at 5789.407 kb on - strand, within PP_5072 at 5789.407 kb on - strand, within PP_5072 at 5789.639 kb on + strand, within PP_5072 at 5789.640 kb on - strand, within PP_5072 at 5789.711 kb on + strand, within PP_5072 at 5789.711 kb on + strand, within PP_5072 at 5789.712 kb on - strand, within PP_5072 at 5789.722 kb on + strand, within PP_5072 at 5789.723 kb on - strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.791 kb on + strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.799 kb on + strand, within PP_5072 at 5789.799 kb on + strand, within PP_5072 at 5789.957 kb on + strand, within PP_5072 at 5789.957 kb on + strand, within PP_5072 at 5789.973 kb on - strand, within PP_5072 at 5789.973 kb on - strand, within PP_5072 at 5790.209 kb on + strand at 5790.210 kb on - strand at 5790.210 kb on - strand at 5790.210 kb on - strand at 5790.352 kb on + strand, within PP_5073 at 5790.523 kb on + strand, within PP_5073 at 5790.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM remove 5,789,242 - PP_5072 0.31 -0.1 5,789,303 + PP_5072 0.36 -0.4 5,789,303 + PP_5072 0.36 -0.2 5,789,303 + PP_5072 0.36 +1.6 5,789,304 - PP_5072 0.36 -0.9 5,789,304 - PP_5072 0.36 -1.2 5,789,304 - PP_5072 0.36 -1.9 5,789,304 - +2.2 5,789,354 + PP_5072 0.40 -0.6 5,789,354 + PP_5072 0.40 +0.4 5,789,355 - PP_5072 0.40 +0.6 5,789,406 + PP_5072 0.44 +0.8 5,789,406 + PP_5072 0.44 -1.2 5,789,406 + PP_5072 0.44 -0.8 5,789,407 - PP_5072 0.44 +0.5 5,789,407 - PP_5072 0.44 +1.0 5,789,639 + PP_5072 0.62 -1.0 5,789,640 - PP_5072 0.62 +0.4 5,789,711 + PP_5072 0.68 -1.1 5,789,711 + PP_5072 0.68 -0.0 5,789,712 - PP_5072 0.68 +0.2 5,789,722 + PP_5072 0.69 -0.1 5,789,723 - PP_5072 0.69 +0.2 5,789,726 + PP_5072 0.69 -0.1 5,789,726 + PP_5072 0.69 +0.2 5,789,726 + PP_5072 0.69 -0.6 5,789,727 - PP_5072 0.69 -0.7 5,789,727 - PP_5072 0.69 +0.4 5,789,727 - PP_5072 0.69 +0.3 5,789,791 + PP_5072 0.74 -0.4 5,789,792 - PP_5072 0.74 -1.0 5,789,792 - PP_5072 0.74 -0.0 5,789,792 - PP_5072 0.74 -0.4 5,789,799 + PP_5072 0.75 +0.9 5,789,799 + PP_5072 0.75 +0.1 5,789,957 + PP_5072 0.87 +0.2 5,789,957 + PP_5072 0.87 +0.4 5,789,973 - PP_5072 0.88 +0.7 5,789,973 - PP_5072 0.88 -1.4 5,790,209 + +0.3 5,790,210 - -0.7 5,790,210 - +0.1 5,790,210 - -1.3 5,790,352 + PP_5073 0.40 -1.1 5,790,523 + PP_5073 0.82 -1.7 5,790,634 + -0.3
Or see this region's nucleotide sequence