Strain Fitness in Pseudomonas putida KT2440 around PP_4952

Experiment: Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM
5,640,975	+		PP_4951	0.45	-0.1
5,640,976	-		PP_4951	0.45	-0.5
5,640,976	-		PP_4951	0.45	+0.3
5,641,232	+		PP_4951	0.63	-0.8
5,641,233	-		PP_4951	0.63	+0.4
5,641,348	+		PP_4951	0.71	-0.4
5,641,348	+		PP_4951	0.71	+0.7
5,641,349	-		PP_4951	0.71	-0.6
5,641,351	+		PP_4951	0.71	+0.1
5,641,352	-		PP_4951	0.71	-1.9
5,641,601	-		PP_4951	0.88	-0.7
5,641,674	+				+1.1
5,641,674	+				+1.1
5,641,675	-				-1.3
5,641,675	-				+0.5
5,641,675	-				+0.3
5,641,787	+				-0.4
5,641,787	+				+0.9
5,641,787	+				-1.2
5,641,788	-				+0.6
5,641,788	-				-0.1
5,641,792	+				+0.6
5,641,792	+				+0.6
5,641,793	-				-0.1
5,641,793	-				+0.0
5,641,793	-				+1.2
5,641,793	-				+0.2
5,641,905	+				-0.1
5,641,905	+				+1.4
5,642,398	-		PP_4952	0.41	-0.6
5,642,921	+		PP_4952	0.79	-0.3
5,643,210	-				-0.6
5,643,213	+				-0.3
5,643,214	-				-0.1
5,643,214	-				-0.2
5,643,235	+				-0.0
5,643,504	-		PP_4953	0.14	-0.0
5,643,615	-		PP_4953	0.23	-0.1