Strain Fitness in Pseudomonas putida KT2440 around PP_1026

Experiment: Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM
1,169,883	+		PP_1025	0.69	-1.9
1,169,922	+		PP_1025	0.71	+0.2
1,169,923	-		PP_1025	0.71	+0.4
1,169,923	-		PP_1025	0.71	+1.0
1,170,021	+		PP_1025	0.77	-0.5
1,170,021	+		PP_1025	0.77	+0.9
1,170,022	-		PP_1025	0.77	-0.5
1,170,022	-		PP_1025	0.77	-0.5
1,170,022	-		PP_1025	0.77	+0.1
1,170,022	-		PP_1025	0.77	+0.4
1,170,266	+				+0.9
1,170,310	+				+0.4
1,170,310	+				+0.7
1,170,311	-				-0.6
1,170,463	-				+0.3
1,170,463	-				+0.0
1,170,463	-				+0.5
1,170,495	+				-0.0
1,170,771	+				+0.3
1,170,772	-				+0.1
1,170,772	-				-0.7
1,170,772	-				-0.6
1,170,772	-				-0.1
1,170,799	+				+1.3
1,171,025	-		PP_1026	0.22	+0.0
1,171,072	-		PP_1026	0.28	-0.7
1,171,371	+		PP_1026	0.64	-0.7
1,171,385	+		PP_1026	0.66	-1.2
1,171,599	+				-0.1
1,171,599	+				-0.7
1,171,600	-				-0.0
1,171,682	+				+1.1
1,171,683	-				+0.1
1,172,507	+		PP_1027	0.60	+0.8
1,172,515	+		PP_1027	0.61	+0.5
1,172,516	-		PP_1027	0.61	+1.1
1,172,519	+		PP_1027	0.61	+0.6
1,172,520	-		PP_1027	0.61	-1.0