Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3520 and Atu3521 are separated by 147 nucleotides Atu3521 and Atu3522 are separated by 81 nucleotides
Atu3520: Atu3520 - preprotein translocase subunit SecA, at 567,257 to 569,965
Atu3520
Atu3521: Atu3521 - permease, at 570,113 to 571,006
Atu3521
Atu3522: Atu3522 - glucans biosynthesis protein, at 571,088 to 572,290
Atu3522
Position (kb) 570
571
572 Strain fitness (log2 ratio) -1
0
1 at 570.003 kb on - strand at 570.052 kb on + strand at 570.083 kb on - strand at 570.243 kb on + strand, within Atu3521 at 570.442 kb on + strand, within Atu3521 at 570.442 kb on + strand, within Atu3521 at 570.475 kb on - strand, within Atu3521 at 570.604 kb on - strand, within Atu3521 at 570.633 kb on - strand, within Atu3521 at 570.731 kb on - strand, within Atu3521 at 570.795 kb on + strand, within Atu3521 at 570.837 kb on + strand, within Atu3521 at 570.931 kb on + strand at 571.135 kb on - strand at 571.137 kb on - strand at 571.147 kb on - strand at 571.172 kb on + strand at 571.172 kb on + strand at 571.212 kb on - strand, within Atu3522 at 571.229 kb on + strand, within Atu3522 at 571.252 kb on + strand, within Atu3522 at 571.698 kb on - strand, within Atu3522
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 570,003 - -0.3 570,052 + -0.9 570,083 - -0.9 570,243 + Atu3521 0.15 -0.2 570,442 + Atu3521 0.37 +0.7 570,442 + Atu3521 0.37 -0.3 570,475 - Atu3521 0.40 -0.1 570,604 - Atu3521 0.55 -1.1 570,633 - Atu3521 0.58 -0.3 570,731 - Atu3521 0.69 +0.2 570,795 + Atu3521 0.76 +0.9 570,837 + Atu3521 0.81 +0.9 570,931 + +0.2 571,135 - +0.6 571,137 - +0.1 571,147 - -0.0 571,172 + -1.4 571,172 + +0.3 571,212 - Atu3522 0.10 +1.5 571,229 + Atu3522 0.12 +0.7 571,252 + Atu3522 0.14 +0.1 571,698 - Atu3522 0.51 +0.8
Or see this region's nucleotide sequence