Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3006 and Atu3007 are separated by 19 nucleotides Atu3007 and Atu3008 are separated by 92 nucleotides Atu3008 and Atu3009 are separated by 137 nucleotides
Atu3006: Atu3006 - hypothetical protein, at 3,393 to 4,811
Atu3006
Atu3007: Atu3007 - hypothetical protein, at 4,831 to 5,085
Atu3007
Atu3008: Atu3008 - hypothetical protein, at 5,178 to 5,372
Atu3008
Atu3009: Atu3009 - exopolysaccharide production protein, at 5,510 to 6,577
Atu3009
Position (kb) 5
6 Strain fitness (log2 ratio) -1
0
1
2 at 4.187 kb on - strand, within Atu3006 at 4.217 kb on - strand, within Atu3006 at 4.263 kb on + strand, within Atu3006 at 4.282 kb on - strand, within Atu3006 at 4.373 kb on + strand, within Atu3006 at 4.757 kb on - strand at 4.789 kb on - strand at 4.935 kb on - strand, within Atu3007 at 5.166 kb on - strand at 5.338 kb on - strand, within Atu3008 at 5.535 kb on - strand at 5.738 kb on + strand, within Atu3009 at 5.885 kb on - strand, within Atu3009
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 4,187 - Atu3006 0.56 -1.3 4,217 - Atu3006 0.58 -0.0 4,263 + Atu3006 0.61 -0.3 4,282 - Atu3006 0.63 -1.7 4,373 + Atu3006 0.69 +0.1 4,757 - -1.0 4,789 - +1.3 4,935 - Atu3007 0.41 +2.3 5,166 - -0.1 5,338 - Atu3008 0.82 -0.8 5,535 - -0.3 5,738 + Atu3009 0.21 +1.3 5,885 - Atu3009 0.35 -0.5
Or see this region's nucleotide sequence