Strain Fitness in Escherichia coli BW25113 around b2565
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,699,085 | - | -0.0 | |||
2,699,173 | - | pdxJ | b2564 | 0.21 | +0.3 |
2,699,178 | - | pdxJ | b2564 | 0.22 | -0.0 |
2,699,290 | - | pdxJ | b2564 | 0.37 | +0.3 |
2,699,465 | + | pdxJ | b2564 | 0.61 | +0.7 |
2,699,465 | + | pdxJ | b2564 | 0.61 | +0.2 |
2,699,504 | - | pdxJ | b2564 | 0.66 | +0.1 |
2,699,519 | + | pdxJ | b2564 | 0.68 | -1.2 |
2,699,536 | + | pdxJ | b2564 | 0.70 | -1.3 |
2,699,536 | + | pdxJ | b2564 | 0.70 | -0.8 |
2,699,713 | + | +0.5 | |||
2,699,774 | - | -1.6 | |||
2,699,774 | - | -2.3 | |||
2,699,823 | + | -6.0 | |||
2,699,924 | + | recO | b2565 | 0.22 | -5.7 |
2,700,066 | - | recO | b2565 | 0.42 | -5.8 |
2,700,126 | + | recO | b2565 | 0.50 | -3.7 |
2,700,128 | + | recO | b2565 | 0.50 | -2.5 |
2,700,219 | + | recO | b2565 | 0.63 | -4.9 |
2,700,280 | - | recO | b2565 | 0.71 | -3.9 |
2,700,280 | - | recO | b2565 | 0.71 | -1.8 |
2,700,326 | - | recO | b2565 | 0.77 | -4.4 |
2,700,359 | - | recO | b2565 | 0.82 | -3.3 |
2,700,467 | - | -4.2 |
Or see this region's nucleotide sequence