Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3263 and Atu3264 are separated by 74 nucleotides Atu3264 and Atu3265 are separated by 6 nucleotides Atu3265 and Atu3266 are separated by 95 nucleotides
Atu3263: Atu3263 - L-seryl-tRNA(Ser) selenium transferase, at 282,210 to 283,406
Atu3263
Atu3264: Atu3264 - IclR family transcriptional regulator, at 283,481 to 284,332
Atu3264
Atu3265: Atu3265 - hypothetical protein, at 284,339 to 284,821
Atu3265
Atu3266: Atu3266 - dihydroorotase, at 284,917 to 286,140
Atu3266
Position (kb) 284
285 Strain fitness (log2 ratio) -1
0
1 at 283.357 kb on + strand at 283.694 kb on + strand, within Atu3264 at 283.756 kb on + strand, within Atu3264 at 283.787 kb on + strand, within Atu3264 at 283.876 kb on + strand, within Atu3264 at 283.978 kb on - strand, within Atu3264 at 284.167 kb on + strand, within Atu3264 at 284.276 kb on - strand at 284.276 kb on - strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.284 kb on + strand at 284.326 kb on + strand at 284.420 kb on + strand, within Atu3265 at 284.443 kb on + strand, within Atu3265 at 284.514 kb on + strand, within Atu3265 at 284.523 kb on + strand, within Atu3265 at 284.592 kb on - strand, within Atu3265 at 284.594 kb on + strand, within Atu3265 at 284.683 kb on - strand, within Atu3265 at 284.827 kb on + strand at 284.883 kb on + strand at 284.883 kb on + strand at 284.888 kb on + strand at 284.888 kb on + strand at 284.912 kb on - strand at 284.969 kb on - strand at 284.977 kb on + strand at 284.984 kb on + strand at 285.026 kb on - strand at 285.058 kb on - strand, within Atu3266 at 285.329 kb on - strand, within Atu3266 at 285.334 kb on + strand, within Atu3266 at 285.335 kb on - strand, within Atu3266 at 285.381 kb on - strand, within Atu3266 at 285.457 kb on + strand, within Atu3266 at 285.465 kb on - strand, within Atu3266 at 285.476 kb on - strand, within Atu3266 at 285.532 kb on + strand, within Atu3266 at 285.613 kb on + strand, within Atu3266 at 285.621 kb on + strand, within Atu3266 at 285.702 kb on + strand, within Atu3266 at 285.710 kb on - strand, within Atu3266 at 285.763 kb on - strand, within Atu3266
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 283,357 + +0.8 283,694 + Atu3264 0.25 +1.0 283,756 + Atu3264 0.32 +0.9 283,787 + Atu3264 0.36 -0.9 283,876 + Atu3264 0.46 +0.6 283,978 - Atu3264 0.58 -0.4 284,167 + Atu3264 0.81 -1.5 284,276 - +0.8 284,276 - -1.5 284,278 + +1.2 284,278 + +1.2 284,278 + +1.2 284,284 + +0.3 284,326 + +0.9 284,420 + Atu3265 0.17 -0.8 284,443 + Atu3265 0.22 +0.6 284,514 + Atu3265 0.36 -0.2 284,523 + Atu3265 0.38 -0.8 284,592 - Atu3265 0.52 -1.3 284,594 + Atu3265 0.53 +0.1 284,683 - Atu3265 0.71 -1.5 284,827 + +0.5 284,883 + +0.1 284,883 + -0.9 284,888 + -1.7 284,888 + +0.6 284,912 - -0.5 284,969 - -1.1 284,977 + +0.9 284,984 + -1.7 285,026 - -0.0 285,058 - Atu3266 0.12 -0.2 285,329 - Atu3266 0.34 +0.2 285,334 + Atu3266 0.34 -1.7 285,335 - Atu3266 0.34 +1.1 285,381 - Atu3266 0.38 -1.1 285,457 + Atu3266 0.44 -0.4 285,465 - Atu3266 0.45 +1.4 285,476 - Atu3266 0.46 +0.8 285,532 + Atu3266 0.50 -0.1 285,613 + Atu3266 0.57 -1.6 285,621 + Atu3266 0.58 -0.4 285,702 + Atu3266 0.64 -0.9 285,710 - Atu3266 0.65 -1.2 285,763 - Atu3266 0.69 +0.1
Or see this region's nucleotide sequence