Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0142 and Atu0143 are separated by 380 nucleotides Atu0143 and Atu0144 are separated by 65 nucleotides Atu0144 and Atu0145 are separated by 274 nucleotides
Atu0142: Atu0142 - cytochrome o ubiquinol oxidase subunit II, at 145,674 to 146,672
Atu0142
Atu0143: Atu0143 - MFS permease, at 147,053 to 148,375
Atu0143
Atu0144: Atu0144 - hypothetical protein, at 148,441 to 148,662
Atu0144
Atu0145: Atu0145 - glutamate synthase large subunit, at 148,937 to 154,285
Atu0145
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 146.054 kb on + strand, within Atu0142 at 146.179 kb on + strand, within Atu0142 at 146.446 kb on + strand, within Atu0142 at 146.604 kb on - strand at 146.772 kb on + strand at 146.780 kb on - strand at 146.871 kb on + strand at 146.871 kb on + strand at 146.879 kb on - strand at 146.879 kb on - strand at 146.886 kb on - strand at 146.920 kb on + strand at 146.992 kb on - strand at 147.005 kb on + strand at 147.078 kb on + strand at 147.079 kb on - strand at 147.098 kb on - strand at 147.098 kb on - strand at 147.110 kb on + strand at 147.110 kb on + strand at 147.260 kb on + strand, within Atu0143 at 147.260 kb on + strand, within Atu0143 at 147.267 kb on - strand, within Atu0143 at 147.478 kb on - strand, within Atu0143 at 147.485 kb on - strand, within Atu0143 at 147.502 kb on - strand, within Atu0143 at 147.504 kb on + strand, within Atu0143 at 147.504 kb on + strand, within Atu0143 at 147.512 kb on - strand, within Atu0143 at 147.512 kb on - strand, within Atu0143 at 147.581 kb on + strand, within Atu0143 at 147.584 kb on - strand, within Atu0143 at 147.589 kb on + strand, within Atu0143 at 147.606 kb on - strand, within Atu0143 at 147.631 kb on + strand, within Atu0143 at 147.649 kb on - strand, within Atu0143 at 147.658 kb on + strand, within Atu0143 at 147.676 kb on - strand, within Atu0143 at 147.707 kb on + strand, within Atu0143 at 147.742 kb on + strand, within Atu0143 at 147.776 kb on - strand, within Atu0143 at 147.787 kb on + strand, within Atu0143 at 147.831 kb on + strand, within Atu0143 at 147.894 kb on - strand, within Atu0143 at 147.903 kb on + strand, within Atu0143 at 147.999 kb on + strand, within Atu0143 at 148.042 kb on - strand, within Atu0143 at 148.072 kb on + strand, within Atu0143 at 148.092 kb on + strand, within Atu0143 at 148.164 kb on + strand, within Atu0143 at 148.228 kb on + strand, within Atu0143 at 148.308 kb on + strand at 148.330 kb on + strand at 148.783 kb on + strand at 148.878 kb on + strand at 148.888 kb on + strand at 148.917 kb on - strand at 148.922 kb on - strand at 148.922 kb on - strand at 149.184 kb on + strand at 149.272 kb on + strand at 149.277 kb on + strand at 149.287 kb on - strand at 149.302 kb on + strand at 149.310 kb on - strand at 149.326 kb on - strand at 149.362 kb on + strand at 149.366 kb on + strand at 149.366 kb on + strand at 149.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 146,054 + Atu0142 0.38 -1.3 146,179 + Atu0142 0.51 -1.6 146,446 + Atu0142 0.77 +0.5 146,604 - -0.5 146,772 + -1.0 146,780 - -2.1 146,871 + -1.3 146,871 + -0.5 146,879 - -0.3 146,879 - -1.0 146,886 - -0.4 146,920 + +0.1 146,992 - -1.0 147,005 + -1.8 147,078 + -3.2 147,079 - -1.1 147,098 - -1.3 147,098 - -1.3 147,110 + -3.0 147,110 + -0.5 147,260 + Atu0143 0.16 -1.7 147,260 + Atu0143 0.16 -2.3 147,267 - Atu0143 0.16 -0.7 147,478 - Atu0143 0.32 -1.0 147,485 - Atu0143 0.33 -2.1 147,502 - Atu0143 0.34 -2.4 147,504 + Atu0143 0.34 -2.6 147,504 + Atu0143 0.34 -2.5 147,512 - Atu0143 0.35 -3.0 147,512 - Atu0143 0.35 -2.1 147,581 + Atu0143 0.40 -1.5 147,584 - Atu0143 0.40 -1.0 147,589 + Atu0143 0.41 -1.3 147,606 - Atu0143 0.42 -1.1 147,631 + Atu0143 0.44 -2.2 147,649 - Atu0143 0.45 -1.3 147,658 + Atu0143 0.46 -0.0 147,676 - Atu0143 0.47 +0.5 147,707 + Atu0143 0.49 -0.6 147,742 + Atu0143 0.52 -2.3 147,776 - Atu0143 0.55 -1.4 147,787 + Atu0143 0.55 -3.2 147,831 + Atu0143 0.59 -1.3 147,894 - Atu0143 0.64 -1.3 147,903 + Atu0143 0.64 -2.0 147,999 + Atu0143 0.72 -0.2 148,042 - Atu0143 0.75 +1.0 148,072 + Atu0143 0.77 -1.4 148,092 + Atu0143 0.79 -0.5 148,164 + Atu0143 0.84 -0.4 148,228 + Atu0143 0.89 -1.9 148,308 + -0.5 148,330 + -0.4 148,783 + -1.2 148,878 + +0.2 148,888 + -1.5 148,917 - +0.9 148,922 - +0.7 148,922 - -0.3 149,184 + -1.3 149,272 + -0.0 149,277 + -2.2 149,287 - +0.1 149,302 + -1.1 149,310 - +1.2 149,326 - -0.6 149,362 + +1.5 149,366 + -0.3 149,366 + -0.6 149,375 + -1.0
Or see this region's nucleotide sequence