Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5013 and Atu5014 overlap by 4 nucleotides Atu5014 and Atu5015 are separated by 14 nucleotides Atu5015 and Atu5016 are separated by 298 nucleotides
Atu5013: Atu5013 - hypothetical protein, at 14,416 to 14,664
Atu5013
Atu5014: Atu5014 - plasmid stabilization protein, at 14,661 to 15,074
Atu5014
Atu5015: Atu5015 - phage-related integrase, at 15,089 to 16,129
Atu5015
Atu5016: Atu5016 - hypothetical protein, at 16,428 to 17,576
Atu5016
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.631 kb on + strand, within Atu5013 at 14.809 kb on + strand, within Atu5014 at 14.844 kb on + strand, within Atu5014 at 14.901 kb on + strand, within Atu5014 at 14.901 kb on + strand, within Atu5014 at 14.901 kb on + strand, within Atu5014 at 14.901 kb on + strand, within Atu5014 at 14.909 kb on - strand, within Atu5014 at 14.958 kb on + strand, within Atu5014 at 14.990 kb on + strand, within Atu5014 at 14.990 kb on + strand, within Atu5014 at 14.990 kb on + strand, within Atu5014 at 14.990 kb on + strand, within Atu5014 at 14.998 kb on - strand, within Atu5014 at 14.998 kb on - strand, within Atu5014 at 15.167 kb on - strand at 15.261 kb on + strand, within Atu5015 at 15.269 kb on - strand, within Atu5015 at 15.308 kb on - strand, within Atu5015 at 15.502 kb on + strand, within Atu5015 at 15.502 kb on + strand, within Atu5015 at 15.559 kb on + strand, within Atu5015 at 15.672 kb on - strand, within Atu5015 at 15.752 kb on + strand, within Atu5015 at 15.760 kb on - strand, within Atu5015 at 15.760 kb on - strand, within Atu5015 at 15.760 kb on - strand, within Atu5015 at 15.770 kb on - strand, within Atu5015 at 15.802 kb on + strand, within Atu5015 at 15.993 kb on - strand, within Atu5015 at 15.995 kb on + strand, within Atu5015 at 15.998 kb on - strand, within Atu5015 at 15.998 kb on - strand, within Atu5015 at 16.035 kb on + strand at 16.035 kb on + strand at 16.045 kb on + strand at 16.066 kb on + strand at 16.066 kb on + strand at 16.107 kb on + strand at 16.211 kb on + strand at 16.219 kb on - strand at 16.267 kb on + strand at 16.513 kb on + strand at 16.550 kb on + strand, within Atu5016 at 16.558 kb on - strand, within Atu5016 at 16.560 kb on - strand, within Atu5016 at 16.580 kb on + strand, within Atu5016 at 16.580 kb on + strand, within Atu5016 at 16.583 kb on - strand, within Atu5016 at 16.588 kb on - strand, within Atu5016 at 16.595 kb on - strand, within Atu5016 at 16.627 kb on + strand, within Atu5016 at 16.712 kb on + strand, within Atu5016 at 16.737 kb on - strand, within Atu5016 at 16.808 kb on + strand, within Atu5016 at 16.824 kb on + strand, within Atu5016 at 16.923 kb on + strand, within Atu5016 at 16.942 kb on - strand, within Atu5016 at 17.000 kb on - strand, within Atu5016
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 14,631 + Atu5013 0.86 +0.4 14,809 + Atu5014 0.36 +0.4 14,844 + Atu5014 0.44 -0.4 14,901 + Atu5014 0.58 +0.0 14,901 + Atu5014 0.58 +0.1 14,901 + Atu5014 0.58 +1.9 14,901 + Atu5014 0.58 -1.3 14,909 - Atu5014 0.60 +0.0 14,958 + Atu5014 0.72 -0.0 14,990 + Atu5014 0.79 +0.3 14,990 + Atu5014 0.79 +1.6 14,990 + Atu5014 0.79 +0.5 14,990 + Atu5014 0.79 -0.9 14,998 - Atu5014 0.81 +0.0 14,998 - Atu5014 0.81 +1.0 15,167 - +0.5 15,261 + Atu5015 0.17 +0.2 15,269 - Atu5015 0.17 +0.9 15,308 - Atu5015 0.21 -1.4 15,502 + Atu5015 0.40 -0.6 15,502 + Atu5015 0.40 -0.8 15,559 + Atu5015 0.45 -0.6 15,672 - Atu5015 0.56 -0.3 15,752 + Atu5015 0.64 -0.6 15,760 - Atu5015 0.64 -0.5 15,760 - Atu5015 0.64 +0.3 15,760 - Atu5015 0.64 -1.0 15,770 - Atu5015 0.65 -3.0 15,802 + Atu5015 0.68 -1.8 15,993 - Atu5015 0.87 +0.1 15,995 + Atu5015 0.87 -0.0 15,998 - Atu5015 0.87 -0.3 15,998 - Atu5015 0.87 -0.5 16,035 + -0.7 16,035 + -1.0 16,045 + +0.2 16,066 + -0.1 16,066 + -0.6 16,107 + +0.1 16,211 + +0.3 16,219 - +0.7 16,267 + +0.6 16,513 + -0.2 16,550 + Atu5016 0.11 +2.4 16,558 - Atu5016 0.11 -0.5 16,560 - Atu5016 0.11 -0.3 16,580 + Atu5016 0.13 -1.6 16,580 + Atu5016 0.13 +0.2 16,583 - Atu5016 0.13 +0.7 16,588 - Atu5016 0.14 +0.4 16,595 - Atu5016 0.15 +0.3 16,627 + Atu5016 0.17 -0.6 16,712 + Atu5016 0.25 +0.6 16,737 - Atu5016 0.27 -0.9 16,808 + Atu5016 0.33 +0.3 16,824 + Atu5016 0.34 +1.2 16,923 + Atu5016 0.43 +1.0 16,942 - Atu5016 0.45 +1.8 17,000 - Atu5016 0.50 +0.3
Or see this region's nucleotide sequence