Strain Fitness in Agrobacterium fabrum C58 around Atu3489

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3488 and Atu3489 are separated by 14 nucleotidesAtu3489 and Atu3490 overlap by 4 nucleotides Atu3488: Atu3488 - ABC transporter permease, at 538,644 to 540,176 Atu3488 Atu3489: Atu3489 - ABC transporter permease, at 540,191 to 541,192 Atu3489 Atu3490: Atu3490 - ABC transporter permease, at 541,189 to 542,199 Atu3490 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1at 539.258 kb on + strand, within Atu3488at 539.298 kb on - strand, within Atu3488at 539.615 kb on + strand, within Atu3488at 539.694 kb on - strand, within Atu3488at 539.769 kb on - strand, within Atu3488at 539.786 kb on - strand, within Atu3488at 539.996 kb on - strand, within Atu3488at 540.095 kb on - strandat 540.255 kb on + strandat 540.275 kb on + strandat 540.276 kb on + strandat 540.430 kb on - strand, within Atu3489at 540.447 kb on + strand, within Atu3489at 540.602 kb on + strand, within Atu3489at 540.638 kb on + strand, within Atu3489at 540.649 kb on - strand, within Atu3489at 540.685 kb on + strand, within Atu3489at 540.718 kb on - strand, within Atu3489at 540.732 kb on + strand, within Atu3489at 540.733 kb on - strand, within Atu3489at 540.763 kb on - strand, within Atu3489at 541.011 kb on + strand, within Atu3489at 541.020 kb on - strand, within Atu3489at 541.137 kb on + strandat 541.164 kb on - strandat 541.169 kb on - strandat 541.264 kb on - strandat 541.377 kb on - strand, within Atu3490at 541.377 kb on - strand, within Atu3490at 541.377 kb on - strand, within Atu3490at 541.422 kb on - strand, within Atu3490at 541.422 kb on - strand, within Atu3490at 541.462 kb on + strand, within Atu3490at 541.492 kb on + strand, within Atu3490at 541.500 kb on - strand, within Atu3490at 541.500 kb on - strand, within Atu3490at 541.505 kb on - strand, within Atu3490at 541.511 kb on + strand, within Atu3490at 541.516 kb on + strand, within Atu3490at 541.519 kb on - strand, within Atu3490at 541.519 kb on - strand, within Atu3490at 541.603 kb on + strand, within Atu3490at 541.619 kb on + strand, within Atu3490at 541.647 kb on - strand, within Atu3490at 541.715 kb on - strand, within Atu3490at 541.715 kb on - strand, within Atu3490at 541.806 kb on + strand, within Atu3490at 541.813 kb on - strand, within Atu3490at 541.814 kb on - strand, within Atu3490at 541.814 kb on - strand, within Atu3490at 541.902 kb on - strand, within Atu3490at 542.150 kb on - strandat 542.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
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539,258 + Atu3488 0.40 +1.0
539,298 - Atu3488 0.43 -0.6
539,615 + Atu3488 0.63 +0.2
539,694 - Atu3488 0.68 -0.3
539,769 - Atu3488 0.73 -0.6
539,786 - Atu3488 0.74 +0.2
539,996 - Atu3488 0.88 -0.4
540,095 - -0.8
540,255 + -1.2
540,275 + +0.2
540,276 + +1.0
540,430 - Atu3489 0.24 +0.5
540,447 + Atu3489 0.26 +0.6
540,602 + Atu3489 0.41 +0.3
540,638 + Atu3489 0.45 +0.2
540,649 - Atu3489 0.46 +0.5
540,685 + Atu3489 0.49 +1.0
540,718 - Atu3489 0.53 +0.0
540,732 + Atu3489 0.54 -0.0
540,733 - Atu3489 0.54 +0.2
540,763 - Atu3489 0.57 +1.4
541,011 + Atu3489 0.82 -0.6
541,020 - Atu3489 0.83 +0.5
541,137 + -0.1
541,164 - -0.7
541,169 - -0.3
541,264 - +0.6
541,377 - Atu3490 0.19 +0.1
541,377 - Atu3490 0.19 +0.2
541,377 - Atu3490 0.19 +0.1
541,422 - Atu3490 0.23 -0.8
541,422 - Atu3490 0.23 -0.1
541,462 + Atu3490 0.27 -0.8
541,492 + Atu3490 0.30 +0.2
541,500 - Atu3490 0.31 +0.6
541,500 - Atu3490 0.31 -2.3
541,505 - Atu3490 0.31 -0.2
541,511 + Atu3490 0.32 +0.8
541,516 + Atu3490 0.32 +1.4
541,519 - Atu3490 0.33 -0.1
541,519 - Atu3490 0.33 -0.6
541,603 + Atu3490 0.41 -0.3
541,619 + Atu3490 0.43 +0.3
541,647 - Atu3490 0.45 +0.3
541,715 - Atu3490 0.52 +0.3
541,715 - Atu3490 0.52 -0.6
541,806 + Atu3490 0.61 +1.0
541,813 - Atu3490 0.62 +0.0
541,814 - Atu3490 0.62 -0.6
541,814 - Atu3490 0.62 +0.4
541,902 - Atu3490 0.71 +0.2
542,150 - +0.1
542,184 + -0.5

Or see this region's nucleotide sequence