Strain Fitness in Pseudomonas putida KT2440 around PP_2814

Experiment: Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM
3,209,332	+		PP_2813	0.58	+0.5
3,209,357	+		PP_2813	0.60	+0.6
3,209,358	-		PP_2813	0.60	+0.5
3,209,358	-		PP_2813	0.60	-0.1
3,209,358	-		PP_2813	0.60	-0.0
3,209,358	-		PP_2813	0.60	+0.3
3,209,694	-				+0.3
3,209,699	+				+0.5
3,209,700	-				-0.1
3,209,870	-				+0.4
3,209,887	+				+0.7
3,209,887	+				-0.4
3,209,891	+				+0.4
3,209,891	+				+0.3
3,209,892	-				+0.1
3,209,892	-				-0.0
3,209,892	-				+1.1
3,210,002	-		PP_2814	0.17	+0.2
3,210,058	+		PP_2814	0.23	-0.8
3,210,061	+		PP_2814	0.24	-1.5
3,210,062	-		PP_2814	0.24	+0.6
3,210,062	-		PP_2814	0.24	-0.3
3,210,305	-		PP_2814	0.52	-1.0
3,210,404	-		PP_2814	0.63	-0.0
3,210,860	-				-0.8
3,210,888	+				+0.1
3,210,888	+				+0.3
3,210,889	-				+0.8
3,210,889	-				-0.8
3,211,018	-				-0.9
3,211,018	-				-0.4
3,211,219	+				+1.1
3,211,220	-		PP_2815	0.20	-2.7
3,211,486	-		PP_2815	0.42	+0.0
3,211,491	+		PP_2815	0.42	+0.1
3,211,565	-		PP_2815	0.48	+0.3
3,211,565	-		PP_2815	0.48	-0.3
3,211,565	-		PP_2815	0.48	+1.0