Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0756 and Atu0757 are separated by 30 nucleotides Atu0757 and Atu0758 are separated by 131 nucleotides Atu0758 and Atu0759 are separated by 209 nucleotides Atu0759 and Atu0760 are separated by 56 nucleotides
Atu0756: Atu0756 - phosphoglycerate mutase, at 753,588 to 754,178
Atu0756
Atu0757: Atu0757 - enoyl-(acyl-carrier-protein) reductase, at 754,209 to 755,027
Atu0757
Atu0758: Atu0758 - molecular chaperone, DnaJ family, at 755,159 to 756,274
Atu0758
Atu0759: Atu0759 - hypothetical protein, at 756,484 to 756,933
Atu0759
Atu0760: Atu0760 - pyridoxamine 5'-phosphate oxidase, at 756,990 to 757,610
Atu0760
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.214 kb on - strand at 754.214 kb on - strand at 755.061 kb on - strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.108 kb on + strand at 755.116 kb on + strand at 755.116 kb on - strand at 755.165 kb on + strand at 755.192 kb on - strand at 755.317 kb on - strand, within Atu0758 at 755.322 kb on - strand, within Atu0758 at 755.378 kb on + strand, within Atu0758 at 755.503 kb on + strand, within Atu0758 at 755.511 kb on - strand, within Atu0758 at 755.511 kb on - strand, within Atu0758 at 755.590 kb on + strand, within Atu0758 at 755.609 kb on - strand, within Atu0758 at 755.706 kb on + strand, within Atu0758 at 755.750 kb on - strand, within Atu0758 at 755.762 kb on + strand, within Atu0758 at 755.845 kb on + strand, within Atu0758 at 755.845 kb on + strand, within Atu0758 at 755.945 kb on + strand, within Atu0758 at 755.996 kb on - strand, within Atu0758 at 756.081 kb on + strand, within Atu0758 at 756.117 kb on + strand, within Atu0758 at 756.117 kb on + strand, within Atu0758 at 756.117 kb on + strand, within Atu0758 at 756.122 kb on + strand, within Atu0758 at 756.125 kb on - strand, within Atu0758 at 756.130 kb on - strand, within Atu0758 at 756.189 kb on + strand at 756.189 kb on + strand at 756.221 kb on - strand at 756.221 kb on - strand at 756.375 kb on + strand at 756.375 kb on + strand at 756.428 kb on - strand at 756.438 kb on + strand at 756.543 kb on - strand, within Atu0759 at 756.558 kb on - strand, within Atu0759 at 756.573 kb on + strand, within Atu0759 at 756.576 kb on - strand, within Atu0759 at 756.598 kb on + strand, within Atu0759 at 756.665 kb on + strand, within Atu0759 at 756.673 kb on - strand, within Atu0759 at 756.708 kb on + strand, within Atu0759 at 756.739 kb on + strand, within Atu0759 at 756.747 kb on - strand, within Atu0759 at 756.749 kb on + strand, within Atu0759 at 756.757 kb on - strand, within Atu0759 at 756.816 kb on + strand, within Atu0759 at 756.816 kb on + strand, within Atu0759 at 756.824 kb on - strand, within Atu0759 at 756.824 kb on - strand, within Atu0759 at 756.843 kb on - strand, within Atu0759
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 754,214 - +1.4 754,214 - -0.2 755,061 - +1.4 755,108 + -0.3 755,108 + -0.2 755,108 + -0.0 755,108 + -0.4 755,108 + -0.3 755,116 + +0.2 755,116 - -1.1 755,165 + -1.6 755,192 - -0.1 755,317 - Atu0758 0.14 +0.4 755,322 - Atu0758 0.15 -0.1 755,378 + Atu0758 0.20 -0.3 755,503 + Atu0758 0.31 -0.3 755,511 - Atu0758 0.32 +0.2 755,511 - Atu0758 0.32 -1.4 755,590 + Atu0758 0.39 +0.6 755,609 - Atu0758 0.40 -0.4 755,706 + Atu0758 0.49 -0.8 755,750 - Atu0758 0.53 +1.7 755,762 + Atu0758 0.54 -0.3 755,845 + Atu0758 0.61 -0.1 755,845 + Atu0758 0.61 +0.2 755,945 + Atu0758 0.70 +0.3 755,996 - Atu0758 0.75 +0.1 756,081 + Atu0758 0.83 +0.4 756,117 + Atu0758 0.86 +0.3 756,117 + Atu0758 0.86 -0.3 756,117 + Atu0758 0.86 +0.5 756,122 + Atu0758 0.86 +0.0 756,125 - Atu0758 0.87 +0.5 756,130 - Atu0758 0.87 -2.2 756,189 + -0.3 756,189 + -0.5 756,221 - -0.3 756,221 - +1.0 756,375 + -0.2 756,375 + -0.2 756,428 - -1.1 756,438 + +0.3 756,543 - Atu0759 0.13 +0.4 756,558 - Atu0759 0.16 -0.0 756,573 + Atu0759 0.20 +1.4 756,576 - Atu0759 0.20 +0.1 756,598 + Atu0759 0.25 +0.0 756,665 + Atu0759 0.40 +0.1 756,673 - Atu0759 0.42 +0.2 756,708 + Atu0759 0.50 +0.2 756,739 + Atu0759 0.57 -2.1 756,747 - Atu0759 0.58 -1.9 756,749 + Atu0759 0.59 -0.1 756,757 - Atu0759 0.61 -0.3 756,816 + Atu0759 0.74 -0.7 756,816 + Atu0759 0.74 -0.3 756,824 - Atu0759 0.76 -0.8 756,824 - Atu0759 0.76 +0.8 756,843 - Atu0759 0.80 -0.5
Or see this region's nucleotide sequence