Strain Fitness in Agrobacterium fabrum C58 around Atu4103

Experiment: Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4101 and Atu4102 are separated by 76 nucleotidesAtu4102 and Atu8037 are separated by 152 nucleotidesAtu8037 and Atu4103 are separated by 226 nucleotidesAtu4103 and Atu4104 are separated by 169 nucleotides Atu4101: Atu4101 - hypothetical protein, at 1,220,530 to 1,221,033 Atu4101 Atu4102: Atu4102 - tRNA-Ala, at 1,221,110 to 1,221,185 Atu4102 Atu8037: Atu8037 - hypothetical protein, at 1,221,338 to 1,221,727 Atu8037 Atu4103: Atu4103 - cytidylate kinase, at 1,221,954 to 1,222,586 Atu4103 Atu4104: Atu4104 - 30S ribosomal protein S1, at 1,222,756 to 1,224,456 Atu4104 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -2 -1 0 1at 1221.397 kb on - strand, within Atu8037at 1221.579 kb on + strand, within Atu8037at 1221.754 kb on + strandat 1221.873 kb on - strandat 1221.878 kb on + strandat 1221.878 kb on - strandat 1221.950 kb on + strandat 1221.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
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1,221,397 - Atu8037 0.15 +0.2
1,221,579 + Atu8037 0.62 -0.4
1,221,754 + -2.0
1,221,873 - -0.2
1,221,878 + +0.3
1,221,878 - -1.0
1,221,950 + +0.1
1,221,950 + +1.6

Or see this region's nucleotide sequence