Experiment: Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5544 and Atu5545 are separated by 165 nucleotides Atu5545 and Atu8053 are separated by 29 nucleotides Atu8053 and Atu5546 are separated by 72 nucleotides Atu5546 and Atu5547 are separated by 71 nucleotides
Atu5544: Atu5544 - hypothetical protein, at 538,571 to 538,945
Atu5544
Atu5545: Atu5545 - hypothetical protein, at 539,111 to 539,338
Atu5545
Atu8053: Atu8053 - hypothetical protein, at 539,368 to 539,553
Atu8053
Atu5546: Atu5546 - LysR family transcriptional regulator, at 539,626 to 540,579
Atu5546
Atu5547: Atu5547 - metallo-beta-lactamase superfamily protein, at 540,651 to 541,622
Atu5547
Position (kb) 539
540
541 Strain fitness (log2 ratio) -1
0
1
2 at 538.729 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.796 kb on - strand, within Atu5544 at 538.796 kb on - strand, within Atu5544 at 538.809 kb on + strand, within Atu5544 at 538.843 kb on + strand, within Atu5544 at 538.851 kb on - strand, within Atu5544 at 539.015 kb on + strand at 539.029 kb on - strand at 539.078 kb on - strand at 539.102 kb on + strand at 539.176 kb on + strand, within Atu5545 at 539.181 kb on + strand, within Atu5545 at 539.265 kb on - strand, within Atu5545 at 539.268 kb on + strand, within Atu5545 at 539.275 kb on - strand, within Atu5545 at 539.379 kb on + strand at 539.462 kb on + strand, within Atu8053 at 539.462 kb on + strand, within Atu8053 at 539.463 kb on + strand, within Atu8053 at 539.505 kb on - strand, within Atu8053 at 539.577 kb on + strand at 539.691 kb on + strand at 539.705 kb on + strand at 539.717 kb on + strand at 539.782 kb on - strand, within Atu5546 at 539.793 kb on + strand, within Atu5546 at 539.808 kb on - strand, within Atu5546 at 539.826 kb on - strand, within Atu5546 at 539.855 kb on + strand, within Atu5546 at 539.880 kb on - strand, within Atu5546 at 539.922 kb on + strand, within Atu5546 at 540.031 kb on - strand, within Atu5546 at 540.081 kb on - strand, within Atu5546 at 540.086 kb on + strand, within Atu5546 at 540.201 kb on + strand, within Atu5546 at 540.238 kb on + strand, within Atu5546 at 540.246 kb on - strand, within Atu5546 at 540.253 kb on - strand, within Atu5546 at 540.269 kb on + strand, within Atu5546 at 540.277 kb on - strand, within Atu5546 at 540.292 kb on + strand, within Atu5546 at 540.292 kb on + strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.313 kb on + strand, within Atu5546 at 540.493 kb on - strand at 540.630 kb on + strand at 540.654 kb on + strand at 540.662 kb on - strand at 540.666 kb on + strand at 540.744 kb on + strand at 540.753 kb on - strand, within Atu5547 at 540.770 kb on - strand, within Atu5547 at 540.772 kb on + strand, within Atu5547 at 540.799 kb on - strand, within Atu5547 at 540.799 kb on - strand, within Atu5547 at 540.799 kb on - strand, within Atu5547 at 540.799 kb on - strand, within Atu5547 at 540.832 kb on + strand, within Atu5547 at 540.917 kb on + strand, within Atu5547 at 540.945 kb on - strand, within Atu5547 at 541.092 kb on + strand, within Atu5547 at 541.133 kb on + strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.159 kb on - strand, within Atu5547 at 541.178 kb on + strand, within Atu5547 at 541.186 kb on - strand, within Atu5547 at 541.300 kb on - strand, within Atu5547 at 541.301 kb on - strand, within Atu5547 at 541.339 kb on + strand, within Atu5547 at 541.415 kb on + strand, within Atu5547 at 541.437 kb on + strand, within Atu5547 at 541.474 kb on + strand, within Atu5547 at 541.506 kb on + strand, within Atu5547 at 541.508 kb on + strand, within Atu5547 at 541.528 kb on + strand at 541.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 538,729 + Atu5544 0.42 -0.3 538,788 + Atu5544 0.58 -0.2 538,788 + Atu5544 0.58 -0.1 538,788 + Atu5544 0.58 -0.2 538,788 + Atu5544 0.58 +0.5 538,788 + Atu5544 0.58 +1.0 538,796 - Atu5544 0.60 +0.3 538,796 - Atu5544 0.60 +1.1 538,809 + Atu5544 0.63 +0.6 538,843 + Atu5544 0.73 -1.1 538,851 - Atu5544 0.75 -0.4 539,015 + +0.2 539,029 - +0.1 539,078 - -0.9 539,102 + +0.8 539,176 + Atu5545 0.29 -0.0 539,181 + Atu5545 0.31 -0.2 539,265 - Atu5545 0.68 -0.2 539,268 + Atu5545 0.69 +0.4 539,275 - Atu5545 0.72 -0.3 539,379 + -0.1 539,462 + Atu8053 0.51 -0.0 539,462 + Atu8053 0.51 -0.3 539,463 + Atu8053 0.51 -0.5 539,505 - Atu8053 0.74 -0.1 539,577 + -0.1 539,691 + -0.5 539,705 + +0.1 539,717 + -0.1 539,782 - Atu5546 0.16 +0.3 539,793 + Atu5546 0.18 +0.8 539,808 - Atu5546 0.19 +0.6 539,826 - Atu5546 0.21 +0.2 539,855 + Atu5546 0.24 +0.7 539,880 - Atu5546 0.27 +0.6 539,922 + Atu5546 0.31 +0.0 540,031 - Atu5546 0.42 +1.8 540,081 - Atu5546 0.48 +0.0 540,086 + Atu5546 0.48 +0.4 540,201 + Atu5546 0.60 +0.0 540,238 + Atu5546 0.64 -0.2 540,246 - Atu5546 0.65 +1.2 540,253 - Atu5546 0.66 -0.1 540,269 + Atu5546 0.67 +0.1 540,277 - Atu5546 0.68 -0.1 540,292 + Atu5546 0.70 +0.1 540,292 + Atu5546 0.70 +0.1 540,300 - Atu5546 0.71 +0.8 540,300 - Atu5546 0.71 +0.7 540,300 - Atu5546 0.71 -0.3 540,313 + Atu5546 0.72 -0.1 540,493 - -0.1 540,630 + -1.2 540,654 + +0.0 540,662 - +1.5 540,666 + -0.2 540,744 + +0.5 540,753 - Atu5547 0.10 -1.3 540,770 - Atu5547 0.12 -0.3 540,772 + Atu5547 0.12 +0.1 540,799 - Atu5547 0.15 +0.2 540,799 - Atu5547 0.15 +0.4 540,799 - Atu5547 0.15 +0.1 540,799 - Atu5547 0.15 +0.5 540,832 + Atu5547 0.19 +0.6 540,917 + Atu5547 0.27 -0.4 540,945 - Atu5547 0.30 +0.4 541,092 + Atu5547 0.45 +0.1 541,133 + Atu5547 0.50 -0.2 541,159 - Atu5547 0.52 +1.5 541,159 - Atu5547 0.52 +0.8 541,159 - Atu5547 0.52 -1.5 541,159 - Atu5547 0.52 +0.5 541,159 - Atu5547 0.52 -0.6 541,159 - Atu5547 0.52 -0.1 541,178 + Atu5547 0.54 -0.4 541,186 - Atu5547 0.55 -0.1 541,300 - Atu5547 0.67 +0.3 541,301 - Atu5547 0.67 +0.2 541,339 + Atu5547 0.71 +0.9 541,415 + Atu5547 0.79 +1.1 541,437 + Atu5547 0.81 +0.0 541,474 + Atu5547 0.85 -0.5 541,506 + Atu5547 0.88 +0.6 541,508 + Atu5547 0.88 +0.4 541,528 + +0.7 541,538 - -0.7
Or see this region's nucleotide sequence