Strain Fitness in Escherichia coli BW25113 around b2614

Experiment: Nickel (II) chloride 1.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfjD and grpE are separated by 54 nucleotidesgrpE and yfjB are separated by 122 nucleotides b4461: yfjD - predicted inner membrane protein (RefSeq), at 2,746,796 to 2,748,082 yfjD b2614: grpE - heat shock protein (NCBI), at 2,748,137 to 2,748,730 grpE b2615: yfjB - inorganic polyphosphate/ATP-NAD kinase (NCBI), at 2,748,853 to 2,749,731 yfjB Position (kb) 2748 2749Strain fitness (log2 ratio) -1 0 1 2 3at 2747.152 kb on + strand, within yfjDat 2747.315 kb on - strand, within yfjDat 2747.315 kb on - strand, within yfjDat 2747.324 kb on + strand, within yfjDat 2747.332 kb on - strand, within yfjDat 2747.414 kb on - strand, within yfjDat 2747.414 kb on - strand, within yfjDat 2747.503 kb on - strand, within yfjDat 2747.503 kb on - strand, within yfjDat 2747.554 kb on + strand, within yfjDat 2747.647 kb on - strand, within yfjDat 2747.647 kb on - strand, within yfjDat 2747.654 kb on - strand, within yfjDat 2747.717 kb on - strand, within yfjDat 2747.740 kb on + strand, within yfjDat 2747.765 kb on - strand, within yfjDat 2747.796 kb on + strand, within yfjDat 2747.805 kb on - strand, within yfjDat 2747.807 kb on + strand, within yfjDat 2747.822 kb on + strand, within yfjDat 2747.955 kb on + strandat 2747.984 kb on + strandat 2748.001 kb on - strandat 2748.011 kb on + strandat 2748.025 kb on + strandat 2748.069 kb on - strandat 2748.571 kb on - strand, within grpEat 2748.623 kb on - strand, within grpEat 2748.804 kb on + strandat 2748.810 kb on + strandat 2748.818 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
remove
2,747,152 + yfjD b4461 0.28 +1.4
2,747,315 - yfjD b4461 0.40 +0.9
2,747,315 - yfjD b4461 0.40 +1.5
2,747,324 + yfjD b4461 0.41 +1.8
2,747,332 - yfjD b4461 0.42 +2.1
2,747,414 - yfjD b4461 0.48 +1.3
2,747,414 - yfjD b4461 0.48 +1.5
2,747,503 - yfjD b4461 0.55 +1.8
2,747,503 - yfjD b4461 0.55 +1.2
2,747,554 + yfjD b4461 0.59 +2.5
2,747,647 - yfjD b4461 0.66 +1.9
2,747,647 - yfjD b4461 0.66 +3.2
2,747,654 - yfjD b4461 0.67 +1.2
2,747,717 - yfjD b4461 0.72 -0.4
2,747,740 + yfjD b4461 0.73 +1.3
2,747,765 - yfjD b4461 0.75 +1.7
2,747,796 + yfjD b4461 0.78 +2.4
2,747,805 - yfjD b4461 0.78 +1.9
2,747,807 + yfjD b4461 0.79 +1.4
2,747,822 + yfjD b4461 0.80 +1.6
2,747,955 + +1.9
2,747,984 + +2.4
2,748,001 - -0.2
2,748,011 + +2.5
2,748,025 + +1.7
2,748,069 - +1.2
2,748,571 - grpE b2614 0.73 +1.1
2,748,623 - grpE b2614 0.82 -0.3
2,748,804 + +0.1
2,748,810 + -0.8
2,748,818 - +0.4

Or see this region's nucleotide sequence