Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3241 and Atu3242 are separated by 17 nucleotides Atu3242 and Atu3243 are separated by 41 nucleotides
Atu3241: Atu3241 - dehydrogenase, at 258,219 to 259,319
Atu3241
Atu3242: Atu3242 - hypothetical protein, at 259,337 to 259,978
Atu3242
Atu3243: Atu3243 - hypothetical protein, at 260,020 to 261,381
Atu3243
Position (kb) 259
260 Strain fitness (log2 ratio) -1
0
1 at 258.343 kb on - strand, within Atu3241 at 258.366 kb on - strand, within Atu3241 at 258.455 kb on - strand, within Atu3241 at 258.561 kb on - strand, within Atu3241 at 258.602 kb on + strand, within Atu3241 at 258.670 kb on - strand, within Atu3241 at 258.800 kb on - strand, within Atu3241 at 258.801 kb on + strand, within Atu3241 at 258.903 kb on + strand, within Atu3241 at 258.911 kb on - strand, within Atu3241 at 258.917 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 258.944 kb on - strand, within Atu3241 at 259.007 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.224 kb on + strand at 259.224 kb on + strand at 259.232 kb on - strand at 259.262 kb on + strand at 259.270 kb on + strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.349 kb on + strand at 259.435 kb on + strand, within Atu3242 at 259.435 kb on + strand, within Atu3242 at 259.442 kb on + strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.486 kb on - strand, within Atu3242 at 259.754 kb on - strand, within Atu3242 at 259.764 kb on - strand, within Atu3242 at 259.941 kb on - strand at 260.024 kb on - strand at 260.078 kb on + strand at 260.089 kb on - strand at 260.098 kb on - strand at 260.193 kb on - strand, within Atu3243 at 260.355 kb on - strand, within Atu3243 at 260.456 kb on - strand, within Atu3243 at 260.483 kb on + strand, within Atu3243 at 260.491 kb on - strand, within Atu3243 at 260.708 kb on + strand, within Atu3243 at 260.718 kb on - strand, within Atu3243 at 260.762 kb on + strand, within Atu3243 at 260.770 kb on - strand, within Atu3243 at 260.771 kb on - strand, within Atu3243 at 260.918 kb on - strand, within Atu3243 at 260.951 kb on + strand, within Atu3243 at 260.959 kb on - strand, within Atu3243
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 258,343 - Atu3241 0.11 -0.7 258,366 - Atu3241 0.13 -0.5 258,455 - Atu3241 0.21 +0.1 258,561 - Atu3241 0.31 -0.4 258,602 + Atu3241 0.35 +0.2 258,670 - Atu3241 0.41 -0.3 258,800 - Atu3241 0.53 -0.2 258,801 + Atu3241 0.53 +0.2 258,903 + Atu3241 0.62 -0.4 258,911 - Atu3241 0.63 +0.2 258,917 - Atu3241 0.63 -0.0 258,944 - Atu3241 0.66 -0.0 258,944 - Atu3241 0.66 +0.1 259,007 + Atu3241 0.72 +0.9 259,085 + Atu3241 0.79 +0.3 259,085 + Atu3241 0.79 -0.1 259,093 - Atu3241 0.79 -0.1 259,093 - Atu3241 0.79 +0.3 259,224 + -0.0 259,224 + +0.7 259,232 - +0.3 259,262 + +0.5 259,270 + -0.0 259,278 - +0.0 259,278 - -0.9 259,349 + +0.8 259,435 + Atu3242 0.15 +0.2 259,435 + Atu3242 0.15 +0.7 259,442 + Atu3242 0.16 -0.2 259,443 - Atu3242 0.17 +0.9 259,443 - Atu3242 0.17 +0.3 259,486 - Atu3242 0.23 -0.1 259,754 - Atu3242 0.65 +0.9 259,764 - Atu3242 0.67 +1.6 259,941 - -0.5 260,024 - -1.0 260,078 + +0.6 260,089 - +0.2 260,098 - +0.8 260,193 - Atu3243 0.13 +0.1 260,355 - Atu3243 0.25 +0.2 260,456 - Atu3243 0.32 -0.1 260,483 + Atu3243 0.34 +0.3 260,491 - Atu3243 0.35 +0.4 260,708 + Atu3243 0.51 -0.3 260,718 - Atu3243 0.51 -0.6 260,762 + Atu3243 0.54 +0.2 260,770 - Atu3243 0.55 +1.2 260,771 - Atu3243 0.55 +0.1 260,918 - Atu3243 0.66 +0.3 260,951 + Atu3243 0.68 +1.2 260,959 - Atu3243 0.69 +0.4
Or see this region's nucleotide sequence