Strain Fitness in Escherichia coli BW25113 around b3834

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrmuC and ubiE are separated by 94 nucleotidesubiE and yigP are separated by 13 nucleotidesyigP and ubiB overlap by 4 nucleotides b3832: rmuC - predicted recombination limiting protein (NCBI), at 4,015,356 to 4,016,783 rmuC b3833: ubiE - ubiquinone/menaquinone biosynthesis methyltransferase (NCBI), at 4,016,878 to 4,017,633 ubiE b3834: yigP - hypothetical protein (NCBI), at 4,017,647 to 4,018,252 yigP b3835: ubiB - putative ubiquinone biosynthesis protein UbiB (NCBI), at 4,018,249 to 4,019,889 ubiB Position (kb) 4017 4018 4019Strain fitness (log2 ratio) -1 0 1 2at 4016.671 kb on + strandat 4016.671 kb on + strandat 4016.687 kb on + strandat 4016.687 kb on + strandat 4016.691 kb on - strandat 4016.699 kb on + strandat 4016.702 kb on + strandat 4016.712 kb on - strandat 4016.797 kb on + strandat 4016.797 kb on + strandat 4016.841 kb on - strandat 4016.841 kb on - strandat 4017.662 kb on + strandat 4017.674 kb on + strandat 4017.674 kb on + strandat 4017.698 kb on + strandat 4017.698 kb on + strandat 4017.711 kb on + strand, within yigPat 4017.732 kb on + strand, within yigPat 4017.752 kb on + strand, within yigPat 4017.797 kb on + strand, within yigPat 4017.797 kb on + strand, within yigPat 4017.816 kb on + strand, within yigPat 4017.816 kb on + strand, within yigPat 4017.843 kb on + strand, within yigPat 4017.843 kb on + strand, within yigPat 4017.916 kb on + strand, within yigPat 4017.992 kb on + strand, within yigPat 4017.992 kb on + strand, within yigPat 4018.018 kb on + strand, within yigPat 4018.018 kb on + strand, within yigPat 4018.038 kb on + strand, within yigP

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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4,016,671 + -0.3
4,016,671 + -0.1
4,016,687 + -1.7
4,016,687 + +0.3
4,016,691 - -0.9
4,016,699 + +0.0
4,016,702 + -1.0
4,016,712 - -0.7
4,016,797 + -1.7
4,016,797 + -0.3
4,016,841 - -0.3
4,016,841 - +0.2
4,017,662 + +0.6
4,017,674 + +0.1
4,017,674 + +0.5
4,017,698 + -1.4
4,017,698 + +0.5
4,017,711 + yigP b3834 0.11 -0.4
4,017,732 + yigP b3834 0.14 +0.5
4,017,752 + yigP b3834 0.17 +0.9
4,017,797 + yigP b3834 0.25 -0.0
4,017,797 + yigP b3834 0.25 +0.3
4,017,816 + yigP b3834 0.28 -0.1
4,017,816 + yigP b3834 0.28 +1.0
4,017,843 + yigP b3834 0.32 -0.5
4,017,843 + yigP b3834 0.32 +0.8
4,017,916 + yigP b3834 0.44 -0.4
4,017,992 + yigP b3834 0.57 -0.0
4,017,992 + yigP b3834 0.57 +1.5
4,018,018 + yigP b3834 0.61 +0.8
4,018,018 + yigP b3834 0.61 +1.0
4,018,038 + yigP b3834 0.65 +2.1

Or see this region's nucleotide sequence