Strain Fitness in Escherichia coli BW25113 around b3184
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,328,805 | - | obgE | b3183 | 0.17 | -0.9 |
3,328,813 | - | obgE | b3183 | 0.18 | +1.4 |
3,329,785 | + | -0.5 | |||
3,329,811 | + | -1.2 | |||
3,329,871 | - | -0.1 | |||
3,329,893 | - | yhbE | b3184 | 0.10 | -0.7 |
3,329,893 | - | yhbE | b3184 | 0.10 | -1.0 |
3,329,904 | + | +0.7 | |||
3,329,910 | + | yhbE | b3184 | 0.12 | +1.5 |
3,330,050 | - | yhbE | b3184 | 0.27 | +0.8 |
3,330,119 | - | yhbE | b3184 | 0.34 | -0.1 |
3,330,119 | - | yhbE | b3184 | 0.34 | +0.2 |
3,330,129 | + | yhbE | b3184 | 0.35 | +1.1 |
3,330,130 | + | yhbE | b3184 | 0.35 | +1.7 |
3,330,130 | + | yhbE | b3184 | 0.35 | +0.7 |
3,330,137 | - | yhbE | b3184 | 0.36 | +0.7 |
3,330,198 | - | yhbE | b3184 | 0.42 | +1.1 |
3,330,232 | + | yhbE | b3184 | 0.46 | -0.7 |
3,330,234 | + | yhbE | b3184 | 0.46 | +1.7 |
3,330,240 | - | yhbE | b3184 | 0.46 | +0.3 |
3,330,240 | - | yhbE | b3184 | 0.46 | +0.1 |
3,330,240 | - | yhbE | b3184 | 0.46 | -3.5 |
3,330,271 | - | yhbE | b3184 | 0.50 | +1.1 |
3,330,272 | - | yhbE | b3184 | 0.50 | +1.5 |
3,330,285 | + | yhbE | b3184 | 0.51 | +2.5 |
3,330,292 | - | yhbE | b3184 | 0.52 | +0.5 |
3,330,347 | + | yhbE | b3184 | 0.57 | -0.3 |
3,330,355 | - | yhbE | b3184 | 0.58 | +1.1 |
3,330,437 | - | yhbE | b3184 | 0.67 | +1.0 |
3,330,451 | + | yhbE | b3184 | 0.68 | +0.3 |
3,330,491 | + | yhbE | b3184 | 0.72 | +3.4 |
3,330,547 | + | yhbE | b3184 | 0.78 | +0.7 |
3,330,608 | - | yhbE | b3184 | 0.84 | +0.2 |
3,330,610 | + | yhbE | b3184 | 0.85 | +1.5 |
3,330,618 | - | yhbE | b3184 | 0.86 | +1.7 |
3,330,618 | - | yhbE | b3184 | 0.86 | +1.6 |
3,330,624 | + | yhbE | b3184 | 0.86 | +0.7 |
3,330,672 | - | +1.1 | |||
3,330,679 | + | +1.5 | |||
3,330,733 | + | +0.7 | |||
3,330,786 | + | -0.3 | |||
3,330,791 | + | +0.1 | |||
3,330,799 | - | +0.7 | |||
3,330,844 | - | -2.5 | |||
3,330,844 | - | -3.6 | |||
3,331,575 | + | +0.2 | |||
3,331,575 | + | -0.8 | |||
3,331,609 | + | +1.1 | |||
3,331,621 | + | -0.2 | |||
3,331,703 | - | +0.0 |
Or see this region's nucleotide sequence