Strain Fitness in Escherichia coli BW25113 around b1456

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyncH and rhsE are separated by 749 nucleotidesrhsE and ydcD overlap by 17 nucleotidesydcD and yncI are separated by 181 nucleotides b1455: yncH - hypothetical protein (NCBI), at 1,524,964 to 1,525,176 yncH b1456: rhsE - rhsE element core protein RshE (RefSeq), at 1,525,926 to 1,527,962 rhsE b1457: ydcD - hypothetical protein (NCBI), at 1,527,946 to 1,528,428 ydcD b1459: yncI - hypothetical protein (NCBI), at 1,528,610 to 1,529,663 yncI Position (kb) 1525 1526 1527 1528Strain fitness (log2 ratio) -1 0 1 2 3at 1525.932 kb on + strandat 1525.932 kb on + strandat 1525.953 kb on + strandat 1525.953 kb on + strandat 1525.953 kb on + strandat 1526.080 kb on + strandat 1527.372 kb on + strand, within rhsEat 1527.416 kb on + strand, within rhsEat 1527.419 kb on + strand, within rhsEat 1527.435 kb on - strand, within rhsEat 1527.462 kb on + strand, within rhsEat 1527.506 kb on + strand, within rhsEat 1527.508 kb on + strand, within rhsEat 1527.508 kb on + strand, within rhsEat 1527.550 kb on + strand, within rhsEat 1527.550 kb on + strand, within rhsEat 1527.565 kb on + strand, within rhsEat 1527.573 kb on - strand, within rhsEat 1527.601 kb on + strand, within rhsEat 1527.601 kb on + strand, within rhsEat 1527.616 kb on + strand, within rhsEat 1527.656 kb on - strand, within rhsEat 1527.659 kb on + strand, within rhsEat 1527.677 kb on + strand, within rhsEat 1527.686 kb on + strand, within rhsEat 1527.686 kb on + strand, within rhsEat 1527.763 kb on + strandat 1527.815 kb on + strandat 1527.877 kb on + strandat 1527.877 kb on + strandat 1527.901 kb on + strandat 1527.901 kb on + strandat 1527.901 kb on + strandat 1528.487 kb on - strandat 1528.494 kb on - strandat 1528.504 kb on - strandat 1528.504 kb on - strandat 1528.606 kb on + strandat 1528.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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1,525,932 + +2.1
1,525,932 + +1.7
1,525,953 + +0.2
1,525,953 + +1.2
1,525,953 + -1.1
1,526,080 + +0.3
1,527,372 + rhsE b1456 0.71 +0.3
1,527,416 + rhsE b1456 0.73 +0.5
1,527,419 + rhsE b1456 0.73 +0.4
1,527,435 - rhsE b1456 0.74 +1.5
1,527,462 + rhsE b1456 0.75 +0.5
1,527,506 + rhsE b1456 0.78 +1.7
1,527,508 + rhsE b1456 0.78 -0.3
1,527,508 + rhsE b1456 0.78 +0.9
1,527,550 + rhsE b1456 0.80 +1.5
1,527,550 + rhsE b1456 0.80 -0.9
1,527,565 + rhsE b1456 0.80 +2.1
1,527,573 - rhsE b1456 0.81 -1.5
1,527,601 + rhsE b1456 0.82 +2.1
1,527,601 + rhsE b1456 0.82 -0.4
1,527,616 + rhsE b1456 0.83 -1.2
1,527,656 - rhsE b1456 0.85 +0.1
1,527,659 + rhsE b1456 0.85 +1.2
1,527,677 + rhsE b1456 0.86 -0.7
1,527,686 + rhsE b1456 0.86 +0.1
1,527,686 + rhsE b1456 0.86 +3.1
1,527,763 + +0.6
1,527,815 + +0.1
1,527,877 + +0.1
1,527,877 + +0.1
1,527,901 + -0.9
1,527,901 + -1.1
1,527,901 + +0.1
1,528,487 - -1.5
1,528,494 - +0.1
1,528,504 - -0.9
1,528,504 - +1.1
1,528,606 + +0.1
1,528,606 + +0.1

Or see this region's nucleotide sequence