Strain Fitness in Escherichia coli BW25113 around b0998
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,060,234 | - | torA | b0997 | 0.69 | -1.3 |
1,060,234 | - | torA | b0997 | 0.69 | +0.3 |
1,060,302 | - | torA | b0997 | 0.72 | +0.4 |
1,060,302 | - | torA | b0997 | 0.72 | -0.1 |
1,060,512 | + | torA | b0997 | 0.80 | +0.3 |
1,060,744 | - | torA | b0997 | 0.89 | +0.1 |
1,060,754 | + | torA | b0997 | 0.89 | +2.6 |
1,060,754 | + | torA | b0997 | 0.89 | -1.1 |
1,060,803 | + | -0.0 | |||
1,060,826 | - | -2.6 | |||
1,060,826 | - | +0.4 | |||
1,060,847 | - | -0.6 | |||
1,060,940 | + | -1.1 | |||
1,060,989 | + | +2.3 | |||
1,061,073 | + | +0.5 | |||
1,061,083 | - | torD | b0998 | 0.10 | +0.7 |
1,061,747 | - | -0.5 | |||
1,061,789 | - | -0.0 | |||
1,061,879 | - | cbpM | b0999 | 0.35 | -0.2 |
1,061,889 | - | cbpM | b0999 | 0.38 | +0.0 |
1,061,978 | - | cbpM | b0999 | 0.67 | -0.7 |
1,061,978 | - | cbpM | b0999 | 0.67 | -0.4 |
1,062,190 | + | cbpA | b1000 | 0.12 | +0.1 |
1,062,191 | - | cbpA | b1000 | 0.12 | +0.5 |
1,062,191 | - | cbpA | b1000 | 0.12 | +1.0 |
1,062,401 | - | cbpA | b1000 | 0.35 | +1.0 |
1,062,545 | - | cbpA | b1000 | 0.51 | +0.6 |
1,062,572 | + | cbpA | b1000 | 0.54 | +0.4 |
Or see this region's nucleotide sequence