Strain Fitness in Escherichia coli BW25113 around b0998

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorA and torD overlap by 4 nucleotidestorD and cbpM are separated by 151 nucleotidescbpM and cbpA overlap by 1 nucleotides b0997: torA - trimethylamine N-oxide (TMAO) reductase I, catalytic subunit (NCBI), at 1,058,479 to 1,061,025 torA b0998: torD - chaperone protein TorD (NCBI), at 1,061,022 to 1,061,621 torD b0999: cbpM - modulator of CbpA co-chaperone (NCBI), at 1,061,773 to 1,062,078 cbpM b1000: cbpA - curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK (NCBI), at 1,062,078 to 1,062,998 cbpA Position (kb) 1061 1062Strain fitness (log2 ratio) -2 -1 0 1 2at 1060.234 kb on - strand, within torAat 1060.234 kb on - strand, within torAat 1060.302 kb on - strand, within torAat 1060.302 kb on - strand, within torAat 1060.512 kb on + strand, within torAat 1060.744 kb on - strand, within torAat 1060.754 kb on + strand, within torAat 1060.754 kb on + strand, within torAat 1060.803 kb on + strandat 1060.826 kb on - strandat 1060.826 kb on - strandat 1060.847 kb on - strandat 1060.940 kb on + strandat 1060.989 kb on + strandat 1061.073 kb on + strandat 1061.083 kb on - strand, within torDat 1061.747 kb on - strandat 1061.789 kb on - strandat 1061.879 kb on - strand, within cbpMat 1061.889 kb on - strand, within cbpMat 1061.978 kb on - strand, within cbpMat 1061.978 kb on - strand, within cbpMat 1062.190 kb on + strand, within cbpAat 1062.191 kb on - strand, within cbpAat 1062.191 kb on - strand, within cbpAat 1062.401 kb on - strand, within cbpAat 1062.545 kb on - strand, within cbpAat 1062.572 kb on + strand, within cbpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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1,060,234 - torA b0997 0.69 -1.3
1,060,234 - torA b0997 0.69 +0.3
1,060,302 - torA b0997 0.72 +0.4
1,060,302 - torA b0997 0.72 -0.1
1,060,512 + torA b0997 0.80 +0.3
1,060,744 - torA b0997 0.89 +0.1
1,060,754 + torA b0997 0.89 +2.6
1,060,754 + torA b0997 0.89 -1.1
1,060,803 + -0.0
1,060,826 - -2.6
1,060,826 - +0.4
1,060,847 - -0.6
1,060,940 + -1.1
1,060,989 + +2.3
1,061,073 + +0.5
1,061,083 - torD b0998 0.10 +0.7
1,061,747 - -0.5
1,061,789 - -0.0
1,061,879 - cbpM b0999 0.35 -0.2
1,061,889 - cbpM b0999 0.38 +0.0
1,061,978 - cbpM b0999 0.67 -0.7
1,061,978 - cbpM b0999 0.67 -0.4
1,062,190 + cbpA b1000 0.12 +0.1
1,062,191 - cbpA b1000 0.12 +0.5
1,062,191 - cbpA b1000 0.12 +1.0
1,062,401 - cbpA b1000 0.35 +1.0
1,062,545 - cbpA b1000 0.51 +0.6
1,062,572 + cbpA b1000 0.54 +0.4

Or see this region's nucleotide sequence