Experiment: Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0503 and Atu0504 are separated by 156 nucleotides Atu0504 and Atu8010 are separated by 41 nucleotides Atu8010 and Atu0505 are separated by 35 nucleotides Atu0505 and Atu0506 are separated by 156 nucleotides
Atu0503: Atu0503 - enoyl-CoA hydratase, at 493,225 to 495,441
Atu0503
Atu0504: Atu0504 - hypothetical protein, at 495,598 to 496,029
Atu0504
Atu8010: Atu8010 - hypothetical protein, at 496,071 to 496,277
Atu8010
Atu0505: Atu0505 - tRNA-Phe, at 496,313 to 496,388
Atu0505
Atu0506: Atu0506 - hypothetical protein, at 496,545 to 497,132
Atu0506
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1 at 494.700 kb on + strand, within Atu0503 at 494.808 kb on + strand, within Atu0503 at 494.808 kb on + strand, within Atu0503 at 494.977 kb on - strand, within Atu0503 at 494.991 kb on + strand, within Atu0503 at 495.090 kb on + strand, within Atu0503 at 495.108 kb on - strand, within Atu0503 at 495.181 kb on + strand, within Atu0503 at 495.270 kb on + strand at 495.278 kb on - strand at 495.278 kb on - strand at 495.278 kb on - strand at 495.278 kb on - strand at 495.331 kb on + strand at 495.363 kb on + strand at 495.384 kb on + strand at 495.392 kb on - strand at 495.452 kb on - strand at 495.457 kb on - strand at 495.583 kb on + strand at 495.583 kb on + strand at 495.583 kb on + strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.681 kb on + strand, within Atu0504 at 495.687 kb on - strand, within Atu0504 at 495.843 kb on + strand, within Atu0504 at 495.906 kb on - strand, within Atu0504 at 496.000 kb on - strand at 496.021 kb on + strand at 496.066 kb on - strand at 496.068 kb on + strand at 496.076 kb on - strand at 496.103 kb on + strand, within Atu8010 at 496.123 kb on + strand, within Atu8010 at 496.178 kb on - strand, within Atu8010 at 496.466 kb on + strand at 496.504 kb on + strand at 496.512 kb on - strand at 496.612 kb on - strand, within Atu0506 at 496.658 kb on - strand, within Atu0506 at 496.663 kb on - strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.673 kb on - strand, within Atu0506 at 496.705 kb on + strand, within Atu0506 at 496.799 kb on - strand, within Atu0506 at 496.809 kb on + strand, within Atu0506 at 496.890 kb on - strand, within Atu0506 at 496.989 kb on + strand, within Atu0506 at 496.994 kb on + strand, within Atu0506
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days remove 494,700 + Atu0503 0.67 +0.8 494,808 + Atu0503 0.71 +0.1 494,808 + Atu0503 0.71 -0.3 494,977 - Atu0503 0.79 -0.5 494,991 + Atu0503 0.80 +0.1 495,090 + Atu0503 0.84 -1.3 495,108 - Atu0503 0.85 -0.8 495,181 + Atu0503 0.88 -0.4 495,270 + +0.2 495,278 - -0.3 495,278 - +1.6 495,278 - +0.2 495,278 - -1.0 495,331 + -0.1 495,363 + -0.6 495,384 + -0.2 495,392 - +0.1 495,452 - -0.3 495,457 - -0.3 495,583 + +0.2 495,583 + -0.2 495,583 + -0.2 495,591 - -0.4 495,591 - +0.1 495,591 - +0.1 495,591 - -0.7 495,681 + Atu0504 0.19 +0.6 495,687 - Atu0504 0.21 +1.0 495,843 + Atu0504 0.57 +0.0 495,906 - Atu0504 0.71 +0.6 496,000 - +0.1 496,021 + +0.0 496,066 - -1.0 496,068 + +0.7 496,076 - -0.1 496,103 + Atu8010 0.15 -0.1 496,123 + Atu8010 0.25 -0.2 496,178 - Atu8010 0.52 +0.6 496,466 + +0.4 496,504 + +0.3 496,512 - +0.6 496,612 - Atu0506 0.11 -0.2 496,658 - Atu0506 0.19 +1.0 496,663 - Atu0506 0.20 +0.3 496,665 + Atu0506 0.20 -0.2 496,665 + Atu0506 0.20 -0.5 496,673 - Atu0506 0.22 -0.0 496,705 + Atu0506 0.27 -0.7 496,799 - Atu0506 0.43 -0.0 496,809 + Atu0506 0.45 -0.1 496,890 - Atu0506 0.59 -2.4 496,989 + Atu0506 0.76 +0.3 496,994 + Atu0506 0.76 -0.2
Or see this region's nucleotide sequence