Experiment: LB_sorghum_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3377 and Atu3378 overlap by 4 nucleotides Atu3378 and Atu3379 overlap by 4 nucleotides
Atu3377: Atu3377 - peptide ABC transporter ATPase, at 418,936 to 420,570
Atu3377
Atu3378: Atu3378 - oligopeptide ABC transporter permease, at 420,567 to 421,385
Atu3378
Atu3379: Atu3379 - peptide ABC transporter permease, at 421,382 to 422,326
Atu3379
Position (kb) 420
421
422 Strain fitness (log2 ratio) -1
0
1
2 at 419.602 kb on - strand, within Atu3377 at 419.698 kb on - strand, within Atu3377 at 419.766 kb on + strand, within Atu3377 at 419.774 kb on - strand, within Atu3377 at 419.799 kb on - strand, within Atu3377 at 419.847 kb on + strand, within Atu3377 at 419.860 kb on + strand, within Atu3377 at 419.906 kb on + strand, within Atu3377 at 419.918 kb on + strand, within Atu3377 at 419.938 kb on + strand, within Atu3377 at 419.988 kb on + strand, within Atu3377 at 419.988 kb on - strand, within Atu3377 at 420.068 kb on + strand, within Atu3377 at 420.290 kb on + strand, within Atu3377 at 420.305 kb on - strand, within Atu3377 at 420.340 kb on + strand, within Atu3377 at 420.394 kb on + strand, within Atu3377 at 420.494 kb on + strand at 420.547 kb on + strand at 420.577 kb on + strand at 420.590 kb on + strand at 420.598 kb on - strand at 420.676 kb on - strand, within Atu3378 at 420.746 kb on + strand, within Atu3378 at 420.754 kb on - strand, within Atu3378 at 420.762 kb on + strand, within Atu3378 at 420.832 kb on - strand, within Atu3378 at 420.923 kb on + strand, within Atu3378 at 420.923 kb on + strand, within Atu3378 at 420.926 kb on - strand, within Atu3378 at 420.931 kb on - strand, within Atu3378 at 421.019 kb on + strand, within Atu3378 at 421.231 kb on - strand, within Atu3378 at 421.281 kb on - strand, within Atu3378 at 421.300 kb on + strand, within Atu3378 at 421.300 kb on + strand, within Atu3378 at 421.305 kb on + strand at 421.308 kb on - strand at 421.308 kb on - strand at 421.318 kb on - strand at 421.329 kb on + strand at 421.377 kb on - strand at 421.413 kb on + strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.483 kb on - strand, within Atu3379 at 421.488 kb on + strand, within Atu3379 at 421.541 kb on + strand, within Atu3379 at 421.541 kb on + strand, within Atu3379 at 421.615 kb on + strand, within Atu3379 at 421.641 kb on + strand, within Atu3379 at 421.643 kb on + strand, within Atu3379 at 421.648 kb on + strand, within Atu3379 at 421.780 kb on + strand, within Atu3379 at 421.788 kb on - strand, within Atu3379 at 421.817 kb on + strand, within Atu3379 at 421.902 kb on - strand, within Atu3379 at 421.905 kb on + strand, within Atu3379 at 421.917 kb on - strand, within Atu3379 at 421.923 kb on + strand, within Atu3379 at 421.931 kb on - strand, within Atu3379 at 422.008 kb on - strand, within Atu3379 at 422.115 kb on - strand, within Atu3379 at 422.164 kb on + strand, within Atu3379 at 422.164 kb on + strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.178 kb on + strand, within Atu3379 at 422.186 kb on - strand, within Atu3379 at 422.188 kb on + strand, within Atu3379 at 422.197 kb on + strand, within Atu3379 at 422.212 kb on + strand, within Atu3379 at 422.288 kb on - strand at 422.300 kb on - strand at 422.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_sorghum_leaf remove 419,602 - Atu3377 0.41 -0.6 419,698 - Atu3377 0.47 -0.1 419,766 + Atu3377 0.51 +1.9 419,774 - Atu3377 0.51 +0.4 419,799 - Atu3377 0.53 -0.2 419,847 + Atu3377 0.56 +0.2 419,860 + Atu3377 0.57 +0.1 419,906 + Atu3377 0.59 -0.4 419,918 + Atu3377 0.60 +0.6 419,938 + Atu3377 0.61 +0.5 419,988 + Atu3377 0.64 -0.1 419,988 - Atu3377 0.64 -0.2 420,068 + Atu3377 0.69 +0.8 420,290 + Atu3377 0.83 +0.6 420,305 - Atu3377 0.84 -0.1 420,340 + Atu3377 0.86 +0.6 420,394 + Atu3377 0.89 -0.1 420,494 + -0.0 420,547 + -0.8 420,577 + -0.4 420,590 + -0.7 420,598 - +0.7 420,676 - Atu3378 0.13 -0.5 420,746 + Atu3378 0.22 +1.4 420,754 - Atu3378 0.23 +0.0 420,762 + Atu3378 0.24 -0.2 420,832 - Atu3378 0.32 +0.2 420,923 + Atu3378 0.43 +1.2 420,923 + Atu3378 0.43 -0.8 420,926 - Atu3378 0.44 -0.3 420,931 - Atu3378 0.44 +0.6 421,019 + Atu3378 0.55 +0.8 421,231 - Atu3378 0.81 +0.5 421,281 - Atu3378 0.87 -1.1 421,300 + Atu3378 0.89 +0.6 421,300 + Atu3378 0.89 +1.5 421,305 + -0.4 421,308 - -1.4 421,308 - -1.2 421,318 - -1.4 421,329 + +0.5 421,377 - +1.2 421,413 + -0.1 421,421 - -0.2 421,421 - -0.2 421,483 - Atu3379 0.11 -0.6 421,488 + Atu3379 0.11 -0.6 421,541 + Atu3379 0.17 +0.1 421,541 + Atu3379 0.17 +0.3 421,615 + Atu3379 0.25 -0.8 421,641 + Atu3379 0.27 -0.6 421,643 + Atu3379 0.28 -0.5 421,648 + Atu3379 0.28 +0.2 421,780 + Atu3379 0.42 +0.2 421,788 - Atu3379 0.43 +0.8 421,817 + Atu3379 0.46 -0.3 421,902 - Atu3379 0.55 -0.5 421,905 + Atu3379 0.55 -0.5 421,917 - Atu3379 0.57 -0.3 421,923 + Atu3379 0.57 +0.2 421,931 - Atu3379 0.58 +0.2 422,008 - Atu3379 0.66 +0.5 422,115 - Atu3379 0.78 +0.3 422,164 + Atu3379 0.83 -0.1 422,164 + Atu3379 0.83 -0.2 422,172 - Atu3379 0.84 -1.2 422,172 - Atu3379 0.84 +0.7 422,172 - Atu3379 0.84 +0.1 422,178 + Atu3379 0.84 +0.1 422,186 - Atu3379 0.85 -0.7 422,188 + Atu3379 0.85 -0.5 422,197 + Atu3379 0.86 -0.2 422,212 + Atu3379 0.88 +0.1 422,288 - +0.9 422,300 - +0.4 422,357 + +0.6
Or see this region's nucleotide sequence