Experiment: LB_sorghum_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0988 and Atu0989 are separated by 483 nucleotides Atu0989 and Atu0990 are separated by 21 nucleotides Atu0990 and Atu0991 are separated by 181 nucleotides
Atu0988: Atu0988 - molecular chaperone, Hsp70 family, at 983,084 to 984,382
Atu0988
Atu0989: Atu0989 - hypothetical protein, at 984,866 to 985,771
Atu0989
Atu0990: Atu0990 - NAD/NADP dependent oxidoreductase, at 985,793 to 986,581
Atu0990
Atu0991: Atu0991 - cation efflux system component, at 986,763 to 987,683
Atu0991
Position (kb) 984
985
986 Strain fitness (log2 ratio) -1
0
1
2 at 984.030 kb on + strand, within Atu0988 at 984.037 kb on - strand, within Atu0988 at 984.084 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.107 kb on - strand, within Atu0988 at 984.235 kb on + strand, within Atu0988 at 984.260 kb on + strand at 984.268 kb on - strand at 984.384 kb on + strand at 984.418 kb on + strand at 984.421 kb on - strand at 984.424 kb on + strand at 984.451 kb on + strand at 984.475 kb on - strand at 984.507 kb on + strand at 984.630 kb on - strand at 984.818 kb on + strand at 984.831 kb on - strand at 984.861 kb on - strand at 984.867 kb on - strand at 984.906 kb on - strand at 985.044 kb on + strand, within Atu0989 at 985.055 kb on + strand, within Atu0989 at 985.138 kb on - strand, within Atu0989 at 985.160 kb on - strand, within Atu0989 at 985.230 kb on + strand, within Atu0989 at 985.256 kb on + strand, within Atu0989 at 985.278 kb on - strand, within Atu0989 at 985.349 kb on + strand, within Atu0989 at 985.362 kb on - strand, within Atu0989 at 985.399 kb on + strand, within Atu0989 at 985.407 kb on - strand, within Atu0989 at 985.407 kb on - strand, within Atu0989 at 985.407 kb on - strand, within Atu0989 at 985.438 kb on - strand, within Atu0989 at 985.471 kb on - strand, within Atu0989 at 985.496 kb on - strand, within Atu0989 at 985.608 kb on - strand, within Atu0989 at 985.688 kb on + strand at 985.688 kb on + strand at 985.741 kb on - strand at 985.922 kb on + strand, within Atu0990 at 985.949 kb on + strand, within Atu0990 at 986.007 kb on + strand, within Atu0990 at 986.015 kb on - strand, within Atu0990 at 986.032 kb on + strand, within Atu0990 at 986.032 kb on + strand, within Atu0990 at 986.040 kb on - strand, within Atu0990 at 986.040 kb on - strand, within Atu0990 at 986.062 kb on - strand, within Atu0990 at 986.067 kb on - strand, within Atu0990 at 986.069 kb on - strand, within Atu0990 at 986.073 kb on + strand, within Atu0990 at 986.081 kb on - strand, within Atu0990 at 986.106 kb on + strand, within Atu0990 at 986.114 kb on - strand, within Atu0990 at 986.151 kb on - strand, within Atu0990 at 986.198 kb on - strand, within Atu0990 at 986.213 kb on - strand, within Atu0990 at 986.314 kb on + strand, within Atu0990 at 986.348 kb on + strand, within Atu0990 at 986.400 kb on - strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.406 kb on + strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.414 kb on - strand, within Atu0990 at 986.521 kb on + strand at 986.521 kb on + strand at 986.521 kb on + strand at 986.521 kb on + strand at 986.529 kb on - strand at 986.529 kb on - strand at 986.529 kb on - strand at 986.594 kb on + strand at 986.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_sorghum_leaf remove 984,030 + Atu0988 0.73 +1.4 984,037 - Atu0988 0.73 +0.6 984,084 + Atu0988 0.77 +1.8 984,099 + Atu0988 0.78 -0.0 984,099 + Atu0988 0.78 +0.5 984,099 + Atu0988 0.78 +0.7 984,107 - Atu0988 0.79 +0.6 984,235 + Atu0988 0.89 -0.3 984,260 + +0.7 984,268 - +0.4 984,384 + -0.4 984,418 + +0.4 984,421 - +1.0 984,424 + +0.5 984,451 + +0.6 984,475 - +0.1 984,507 + +0.6 984,630 - -0.6 984,818 + -0.4 984,831 - -0.0 984,861 - +1.4 984,867 - +0.3 984,906 - +0.5 985,044 + Atu0989 0.20 -0.9 985,055 + Atu0989 0.21 -0.7 985,138 - Atu0989 0.30 -0.3 985,160 - Atu0989 0.32 -0.3 985,230 + Atu0989 0.40 -0.6 985,256 + Atu0989 0.43 -0.3 985,278 - Atu0989 0.45 -1.4 985,349 + Atu0989 0.53 +0.6 985,362 - Atu0989 0.55 -0.4 985,399 + Atu0989 0.59 -0.1 985,407 - Atu0989 0.60 +0.3 985,407 - Atu0989 0.60 -0.4 985,407 - Atu0989 0.60 -1.2 985,438 - Atu0989 0.63 -0.6 985,471 - Atu0989 0.67 +0.7 985,496 - Atu0989 0.70 -0.6 985,608 - Atu0989 0.82 -0.0 985,688 + -0.8 985,688 + +0.6 985,741 - +0.3 985,922 + Atu0990 0.16 +0.0 985,949 + Atu0990 0.20 +0.6 986,007 + Atu0990 0.27 -0.3 986,015 - Atu0990 0.28 +0.4 986,032 + Atu0990 0.30 +0.2 986,032 + Atu0990 0.30 -0.2 986,040 - Atu0990 0.31 +0.7 986,040 - Atu0990 0.31 -0.9 986,062 - Atu0990 0.34 +0.1 986,067 - Atu0990 0.35 -0.1 986,069 - Atu0990 0.35 -0.1 986,073 + Atu0990 0.35 -0.1 986,081 - Atu0990 0.37 +0.0 986,106 + Atu0990 0.40 -0.6 986,114 - Atu0990 0.41 +0.7 986,151 - Atu0990 0.45 -0.2 986,198 - Atu0990 0.51 -0.1 986,213 - Atu0990 0.53 +0.0 986,314 + Atu0990 0.66 +0.4 986,348 + Atu0990 0.70 -0.6 986,400 - Atu0990 0.77 -0.9 986,406 + Atu0990 0.78 -0.3 986,406 + Atu0990 0.78 +0.3 986,406 + Atu0990 0.78 -0.1 986,406 + Atu0990 0.78 -0.3 986,406 + Atu0990 0.78 -1.4 986,414 - Atu0990 0.79 +0.1 986,414 - Atu0990 0.79 +0.8 986,414 - Atu0990 0.79 -1.2 986,414 - Atu0990 0.79 +0.5 986,414 - Atu0990 0.79 +0.0 986,414 - Atu0990 0.79 -0.3 986,414 - Atu0990 0.79 +0.3 986,521 + +0.1 986,521 + +0.3 986,521 + -0.0 986,521 + +0.4 986,529 - -1.1 986,529 - +0.1 986,529 - +1.2 986,594 + -0.2 986,767 - -0.4
Or see this region's nucleotide sequence