Strain Fitness in Escherichia coli BW25113 around b4501

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
2,473,333	+	b2361	b2361	0.61	-0.3
2,473,333	+	b2361	b2361	0.61	-0.7
2,473,341	-	b2361	b2361	0.62	+1.1
2,473,351	-	b2361	b2361	0.64	-0.1
2,473,410	-	b2361	b2361	0.75	+0.0
2,473,445	-	b2361	b2361	0.82	+0.0
2,473,479	-	b2361	b2361	0.88	-0.3
2,473,607	+	yfdS	b2362	0.20	-0.5
2,473,627	-	yfdS	b2362	0.26	+0.5
2,473,627	-	yfdS	b2362	0.26	-0.5
2,473,629	+	yfdS	b2362	0.26	+0.4
2,473,649	+	yfdS	b2362	0.32	-0.6
2,473,724	+	yfdS	b2362	0.53	-0.4
2,473,740	+	yfdS	b2362	0.57	-0.3
2,473,763	+	yfdS	b2362	0.63	-1.4
2,473,770	+	yfdS	b2362	0.65	+0.5
2,473,788	-	yfdS	b2362	0.70	+1.5
2,473,788	-	yfdS	b2362	0.70	+1.2
2,473,866	+				-1.1
2,473,888	+				-1.5
2,473,888	+				-0.7
2,473,950	+	yfdT	b2363	0.18	-1.8
2,473,950	+	yfdT	b2363	0.18	-1.5
2,473,950	+	yfdT	b2363	0.18	-0.7
2,473,950	+	yfdT	b2363	0.18	-2.7
2,473,970	+	yfdT	b2363	0.25	+0.5
2,473,982	+	yfdT	b2363	0.28	-1.1
2,474,110	-	yfdT	b2363	0.70	+0.7
2,474,119	+	yfdT	b2363	0.73	+0.5
2,474,127	-	yfdT	b2363	0.76	-0.3
2,474,213	-	ypdJ	b4545	0.20	+0.5
2,474,221	-	ypdJ	b4545	0.35	+0.5
2,474,227	-	ypdJ	b4545	0.47	-0.8
2,474,316	+				+2.8
2,474,316	+				-0.3
2,474,320	-				-0.2
2,474,329	+				+0.7
2,474,343	+				-0.2
2,474,344	+				-0.6
2,474,352	-	torI	b4501	0.10	+0.2
2,474,390	-	torI	b4501	0.29	+0.2
2,474,390	-	torI	b4501	0.29	+0.3
2,474,453	-	torI	b4501	0.60	+0.4
2,474,480	+	torI	b4501	0.74	+0.5
2,474,634	+				-0.0
2,474,668	+				-0.2
2,474,689	-				-0.3
2,474,691	+				+0.0
2,474,734	-				-0.3
2,474,734	-				+0.6
2,474,747	-				+0.8
2,474,809	-				+0.1
2,475,037	-	dsdC	b2364	0.34	-0.4
2,475,057	-	dsdC	b2364	0.36	+0.6
2,475,123	-	dsdC	b2364	0.43	-1.4
2,475,188	-	dsdC	b2364	0.50	-0.2
2,475,188	-	dsdC	b2364	0.50	-0.1
2,475,231	+	dsdC	b2364	0.55	+0.2
2,475,309	+	dsdC	b2364	0.63	+0.0
2,475,312	-	dsdC	b2364	0.64	+0.3
2,475,320	+	dsdC	b2364	0.65	+1.5
2,475,382	+	dsdC	b2364	0.71	+0.0
2,475,404	-	dsdC	b2364	0.74	-0.1
2,475,477	-	dsdC	b2364	0.81	+0.1
2,475,488	+	dsdC	b2364	0.82	-0.3