Strain Fitness in Escherichia coli BW25113 around b3005

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,147,865	-	yghA	b3003	0.20	+1.2
3,147,865	-	yghA	b3003	0.20	-0.1
3,147,981	+	yghA	b3003	0.34	-0.6
3,147,993	-	yghA	b3003	0.35	-0.4
3,147,993	-	yghA	b3003	0.35	-0.3
3,148,064	-	yghA	b3003	0.43	-2.5
3,148,064	-	yghA	b3003	0.43	-0.2
3,148,078	-	yghA	b3003	0.45	+0.1
3,148,175	+	yghA	b3003	0.55	+0.3
3,148,175	+	yghA	b3003	0.55	+0.7
3,148,175	+	yghA	b3003	0.55	+0.0
3,148,175	+	yghA	b3003	0.55	-0.1
3,148,183	-	yghA	b3003	0.56	-0.1
3,148,183	-	yghA	b3003	0.56	-0.1
3,148,226	+	yghA	b3003	0.61	+1.0
3,148,250	-	yghA	b3003	0.64	-1.1
3,148,259	-	yghA	b3003	0.65	+0.1
3,148,282	-	yghA	b3003	0.68	+0.5
3,148,282	-	yghA	b3003	0.68	+0.8
3,148,299	+	yghA	b3003	0.69	+0.3
3,148,299	+	yghA	b3003	0.69	-0.6
3,148,371	+	yghA	b3003	0.78	+0.4
3,148,384	-	yghA	b3003	0.79	-0.3
3,148,384	-	yghA	b3003	0.79	-0.4
3,148,386	+	yghA	b3003	0.79	+0.2
3,148,386	+	yghA	b3003	0.79	+0.5
3,148,387	-	yghA	b3003	0.79	+1.7
3,148,387	-	yghA	b3003	0.79	-0.1
3,148,515	+				-1.8
3,148,519	+				+1.1
3,148,540	-				+0.3
3,148,552	-				+0.6
3,148,611	-				-0.5
3,148,694	+				+0.4
3,148,700	-				-0.6
3,148,758	-				+0.1
3,148,758	-				+0.9
3,148,875	-				-0.6
3,148,906	+	exbD	b3005	0.15	-0.8
3,148,936	-	exbD	b3005	0.23	-0.9
3,148,992	-	exbD	b3005	0.36	-1.2
3,149,036	+	exbD	b3005	0.46	-0.3
3,149,092	+	exbD	b3005	0.59	-0.0
3,149,120	-				+2.0
3,149,120	-	exbD	b3005	0.66	-1.6
3,149,131	+	exbD	b3005	0.68	-0.7
3,149,131	+	exbD	b3005	0.68	+0.4
3,149,208	+	exbD	b3005	0.86	-0.3
3,149,377	+	exbB	b3006	0.14	-0.2
3,149,377	+	exbB	b3006	0.14	-0.4
3,149,380	+	exbB	b3006	0.15	-0.7
3,149,396	-	exbB	b3006	0.17	-0.8
3,149,448	-	exbB	b3006	0.24	+0.0
3,149,501	+	exbB	b3006	0.31	-0.1
3,149,508	+	exbB	b3006	0.32	+0.7
3,149,543	-	exbB	b3006	0.37	-0.5
3,149,553	-	exbB	b3006	0.38	-0.3
3,149,554	+	exbB	b3006	0.38	-1.1
3,149,564	+	exbB	b3006	0.40	+0.0
3,149,659	+	exbB	b3006	0.53	-0.7
3,149,682	-	exbB	b3006	0.56	-0.9
3,149,682	-	exbB	b3006	0.56	-1.1
3,149,690	-	exbB	b3006	0.57	-0.7
3,149,707	+	exbB	b3006	0.59	-0.4
3,149,710	-	exbB	b3006	0.60	-0.0
3,149,718	+	exbB	b3006	0.61	+0.1
3,149,803	-	exbB	b3006	0.72	-0.3
3,149,803	-	exbB	b3006	0.72	-1.2
3,149,866	+	exbB	b3006	0.81	-1.2
3,149,956	+				-0.0
3,149,956	+				+0.5
3,149,956	+				+0.2
3,149,983	+				-1.2
3,150,016	-				-0.3
3,150,257	-				-0.2