Strain Fitness in Escherichia coli BW25113 around b2424
Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
2,538,824 | + | +0.4 | |||
2,538,824 | + | +1.6 | |||
2,538,846 | - | +0.0 | |||
2,538,846 | - | +0.2 | |||
2,538,952 | + | cysW | b2423 | 0.14 | -0.8 |
2,538,952 | + | cysW | b2423 | 0.14 | +0.7 |
2,538,959 | + | cysW | b2423 | 0.15 | -0.3 |
2,538,961 | + | cysW | b2423 | 0.15 | +0.5 |
2,538,986 | + | cysW | b2423 | 0.18 | +0.0 |
2,539,072 | + | cysW | b2423 | 0.28 | +0.4 |
2,539,173 | + | cysW | b2423 | 0.40 | -0.0 |
2,539,173 | + | cysW | b2423 | 0.40 | +0.7 |
2,539,240 | + | cysW | b2423 | 0.47 | -0.6 |
2,539,249 | - | cysW | b2423 | 0.48 | -0.1 |
2,539,249 | - | cysW | b2423 | 0.48 | +2.6 |
2,539,456 | + | cysW | b2423 | 0.72 | +1.0 |
2,539,468 | - | cysW | b2423 | 0.73 | +1.6 |
2,539,468 | - | cysW | b2423 | 0.73 | -1.1 |
2,539,468 | - | cysW | b2423 | 0.73 | +0.6 |
2,539,694 | - | +0.1 | |||
2,540,062 | + | cysU | b2424 | 0.43 | -0.8 |
2,540,110 | - | cysU | b2424 | 0.49 | +0.8 |
2,540,110 | - | cysU | b2424 | 0.49 | +1.2 |
2,540,129 | + | cysU | b2424 | 0.51 | -0.1 |
2,540,492 | + | +1.6 | |||
2,540,535 | + | +0.1 | |||
2,540,563 | - | +0.8 | |||
2,540,677 | - | cysP | b2425 | 0.14 | +0.3 |
2,540,677 | - | cysP | b2425 | 0.14 | +0.6 |
2,540,695 | - | cysP | b2425 | 0.16 | -0.0 |
2,540,752 | - | cysP | b2425 | 0.21 | +0.1 |
2,540,816 | - | cysP | b2425 | 0.28 | +0.8 |
2,540,858 | + | cysP | b2425 | 0.32 | -0.4 |
2,540,872 | + | cysP | b2425 | 0.33 | +0.3 |
2,541,064 | + | cysP | b2425 | 0.52 | +0.5 |
2,541,066 | + | cysP | b2425 | 0.52 | -0.1 |
2,541,077 | - | cysP | b2425 | 0.53 | +0.2 |
2,541,159 | + | cysP | b2425 | 0.61 | +0.1 |
2,541,181 | - | cysP | b2425 | 0.64 | +0.5 |
2,541,194 | + | cysP | b2425 | 0.65 | +0.5 |
2,541,229 | - | cysP | b2425 | 0.68 | +0.5 |
2,541,421 | - | cysP | b2425 | 0.87 | +0.5 |
Or see this region's nucleotide sequence