Strain Fitness in Escherichia coli BW25113 around b1728

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyniB and yniC are separated by 146 nucleotidesyniC and ydjM are separated by 162 nucleotidesydjM and ydjN are separated by 132 nucleotides b1726: yniB - predicted inner membrane protein (NCBI), at 1,806,721 to 1,807,257 yniB b1727: yniC - predicted hydrolase (NCBI), at 1,807,404 to 1,808,072 yniC b1728: ydjM - predicted inner membrane protein regulated by LexA (RefSeq), at 1,808,235 to 1,808,825 ydjM b1729: ydjN - predicted transporter (NCBI), at 1,808,958 to 1,810,349 ydjN Position (kb) 1808 1809Strain fitness (log2 ratio) -1 0 1at 1807.241 kb on + strandat 1807.253 kb on + strandat 1807.288 kb on + strandat 1807.353 kb on + strandat 1807.363 kb on + strandat 1807.387 kb on - strandat 1807.387 kb on - strandat 1807.470 kb on + strandat 1807.489 kb on + strand, within yniCat 1807.867 kb on - strand, within yniCat 1807.904 kb on - strand, within yniCat 1808.090 kb on + strandat 1808.185 kb on - strandat 1808.203 kb on - strandat 1808.359 kb on + strand, within ydjMat 1808.524 kb on - strand, within ydjMat 1808.524 kb on - strand, within ydjMat 1808.679 kb on + strand, within ydjMat 1808.870 kb on + strandat 1808.924 kb on - strandat 1809.193 kb on + strand, within ydjNat 1809.214 kb on + strand, within ydjNat 1809.242 kb on + strand, within ydjNat 1809.242 kb on + strand, within ydjNat 1809.720 kb on + strand, within ydjNat 1809.720 kb on + strand, within ydjN

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,807,241 + +0.3
1,807,253 + +0.7
1,807,288 + +0.3
1,807,353 + +0.0
1,807,363 + +0.1
1,807,387 - +0.3
1,807,387 - -0.4
1,807,470 + -0.7
1,807,489 + yniC b1727 0.13 -0.0
1,807,867 - yniC b1727 0.69 +0.6
1,807,904 - yniC b1727 0.75 +0.5
1,808,090 + +1.0
1,808,185 - -0.1
1,808,203 - -1.1
1,808,359 + ydjM b1728 0.21 +0.3
1,808,524 - ydjM b1728 0.49 +0.4
1,808,524 - ydjM b1728 0.49 +0.6
1,808,679 + ydjM b1728 0.75 +0.1
1,808,870 + -0.9
1,808,924 - -0.2
1,809,193 + ydjN b1729 0.17 -0.5
1,809,214 + ydjN b1729 0.18 -0.9
1,809,242 + ydjN b1729 0.20 -0.9
1,809,242 + ydjN b1729 0.20 -0.8
1,809,720 + ydjN b1729 0.55 -0.8
1,809,720 + ydjN b1729 0.55 -0.2

Or see this region's nucleotide sequence