Strain Fitness in Escherichia coli BW25113 around b1728
Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,807,241 | + | +0.3 | |||
1,807,253 | + | +0.7 | |||
1,807,288 | + | +0.3 | |||
1,807,353 | + | +0.0 | |||
1,807,363 | + | +0.1 | |||
1,807,387 | - | +0.3 | |||
1,807,387 | - | -0.4 | |||
1,807,470 | + | -0.7 | |||
1,807,489 | + | yniC | b1727 | 0.13 | -0.0 |
1,807,867 | - | yniC | b1727 | 0.69 | +0.6 |
1,807,904 | - | yniC | b1727 | 0.75 | +0.5 |
1,808,090 | + | +1.0 | |||
1,808,185 | - | -0.1 | |||
1,808,203 | - | -1.1 | |||
1,808,359 | + | ydjM | b1728 | 0.21 | +0.3 |
1,808,524 | - | ydjM | b1728 | 0.49 | +0.4 |
1,808,524 | - | ydjM | b1728 | 0.49 | +0.6 |
1,808,679 | + | ydjM | b1728 | 0.75 | +0.1 |
1,808,870 | + | -0.9 | |||
1,808,924 | - | -0.2 | |||
1,809,193 | + | ydjN | b1729 | 0.17 | -0.5 |
1,809,214 | + | ydjN | b1729 | 0.18 | -0.9 |
1,809,242 | + | ydjN | b1729 | 0.20 | -0.9 |
1,809,242 | + | ydjN | b1729 | 0.20 | -0.8 |
1,809,720 | + | ydjN | b1729 | 0.55 | -0.8 |
1,809,720 | + | ydjN | b1729 | 0.55 | -0.2 |
Or see this region's nucleotide sequence