Experiment: LB_sorghum_leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0473 and Atu0474 are separated by 76 nucleotides Atu0474 and Atu0475 overlap by 4 nucleotides Atu0475 and Atu0476 are separated by 268 nucleotides
Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760
Atu0473
Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382
Atu0474
Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083
Atu0475
Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077
Atu0476
Position (kb) 463
464
465 Strain fitness (log2 ratio) -1
0
1
2
3 at 462.390 kb on - strand, within Atu0473 at 462.409 kb on + strand, within Atu0473 at 462.469 kb on + strand, within Atu0473 at 462.487 kb on - strand, within Atu0473 at 462.516 kb on - strand, within Atu0473 at 462.625 kb on - strand, within Atu0473 at 462.630 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.650 kb on + strand, within Atu0473 at 462.882 kb on - strand at 463.010 kb on + strand, within Atu0474 at 463.015 kb on + strand, within Atu0474 at 463.026 kb on + strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.137 kb on + strand, within Atu0474 at 463.153 kb on + strand, within Atu0474 at 463.419 kb on + strand at 463.424 kb on + strand at 463.424 kb on + strand at 463.444 kb on + strand at 463.452 kb on - strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.539 kb on + strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.662 kb on + strand, within Atu0475 at 463.715 kb on + strand, within Atu0475 at 463.745 kb on - strand, within Atu0475 at 463.834 kb on - strand, within Atu0475 at 463.837 kb on - strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.867 kb on + strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.879 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.932 kb on + strand, within Atu0475 at 463.987 kb on + strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.127 kb on - strand at 464.220 kb on + strand at 464.228 kb on - strand at 464.228 kb on - strand at 464.347 kb on + strand at 464.414 kb on - strand at 464.414 kb on - strand at 464.477 kb on - strand, within Atu0476 at 464.489 kb on + strand, within Atu0476 at 464.495 kb on + strand, within Atu0476 at 464.539 kb on + strand, within Atu0476 at 464.623 kb on - strand, within Atu0476 at 464.658 kb on - strand, within Atu0476 at 464.702 kb on + strand, within Atu0476 at 464.795 kb on - strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.865 kb on - strand, within Atu0476 at 464.928 kb on - strand, within Atu0476 at 464.932 kb on - strand, within Atu0476 at 464.941 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.960 kb on - strand, within Atu0476 at 464.962 kb on + strand, within Atu0476 at 464.974 kb on - strand, within Atu0476
Per-strain Table
Position Strand Gene LocusTag Fraction LB_sorghum_leaf remove 462,390 - Atu0473 0.59 +0.6 462,409 + Atu0473 0.62 +0.0 462,469 + Atu0473 0.68 +0.2 462,487 - Atu0473 0.70 -0.6 462,516 - Atu0473 0.73 +0.6 462,625 - Atu0473 0.85 -0.3 462,630 - Atu0473 0.86 +0.3 462,635 - Atu0473 0.86 -0.3 462,635 - Atu0473 0.86 -0.8 462,650 + Atu0473 0.88 -0.4 462,882 - +0.8 463,010 + Atu0474 0.32 -0.6 463,015 + Atu0474 0.33 +0.1 463,026 + Atu0474 0.35 -0.1 463,034 - Atu0474 0.36 -0.4 463,034 - Atu0474 0.36 -0.2 463,034 - Atu0474 0.36 -0.5 463,137 + Atu0474 0.55 -0.5 463,153 + Atu0474 0.58 -0.5 463,419 + -0.5 463,424 + +1.9 463,424 + -0.0 463,444 + +0.4 463,452 - Atu0475 0.10 -0.1 463,475 + Atu0475 0.14 +0.3 463,475 + Atu0475 0.14 +0.0 463,539 + Atu0475 0.23 +0.0 463,564 - Atu0475 0.26 -0.1 463,564 - Atu0475 0.26 -0.0 463,564 - Atu0475 0.26 -0.7 463,662 + Atu0475 0.40 -0.2 463,715 + Atu0475 0.48 +3.2 463,745 - Atu0475 0.52 -1.4 463,834 - Atu0475 0.65 -0.0 463,837 - Atu0475 0.65 -0.4 463,861 + Atu0475 0.68 -0.3 463,861 + Atu0475 0.68 -0.8 463,867 + Atu0475 0.69 -1.2 463,869 - Atu0475 0.70 -0.2 463,869 - Atu0475 0.70 -1.7 463,876 + Atu0475 0.70 -0.9 463,876 + Atu0475 0.70 -0.9 463,876 + Atu0475 0.70 -0.9 463,879 - Atu0475 0.71 +0.6 463,884 - Atu0475 0.72 +0.4 463,884 - Atu0475 0.72 +0.2 463,884 - Atu0475 0.72 -0.5 463,932 + Atu0475 0.78 +0.6 463,987 + Atu0475 0.86 -0.8 464,009 - Atu0475 0.89 -1.0 464,009 - Atu0475 0.89 -0.4 464,127 - -1.1 464,220 + -0.2 464,228 - -0.4 464,228 - -0.3 464,347 + -0.7 464,414 - -0.7 464,414 - +1.0 464,477 - Atu0476 0.17 -0.2 464,489 + Atu0476 0.19 -1.2 464,495 + Atu0476 0.20 +0.2 464,539 + Atu0476 0.26 +0.0 464,623 - Atu0476 0.37 -0.5 464,658 - Atu0476 0.42 +0.2 464,702 + Atu0476 0.48 -0.3 464,795 - Atu0476 0.61 -1.0 464,845 + Atu0476 0.68 -0.1 464,845 + Atu0476 0.68 -0.3 464,845 + Atu0476 0.68 +1.3 464,853 - Atu0476 0.69 -0.0 464,853 - Atu0476 0.69 +0.3 464,853 - Atu0476 0.69 +0.0 464,853 - Atu0476 0.69 -1.1 464,853 - Atu0476 0.69 -0.4 464,857 + Atu0476 0.70 -0.1 464,857 + Atu0476 0.70 -0.1 464,865 - Atu0476 0.71 +0.3 464,928 - Atu0476 0.79 -0.9 464,932 - Atu0476 0.80 +0.3 464,941 + Atu0476 0.81 -0.2 464,957 + Atu0476 0.83 -0.0 464,957 + Atu0476 0.83 -0.0 464,960 - Atu0476 0.84 +0.1 464,962 + Atu0476 0.84 +0.0 464,974 - Atu0476 0.86 +0.0
Or see this region's nucleotide sequence