Strain Fitness in Escherichia coli BW25113 around b4522

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysB and yciX_1 are separated by 330 nucleotidesyciX_1 and yciX are separated by 2 nucleotidesyciX and acnA are separated by 372 nucleotides b1275: cysB - DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI), at 1,331,879 to 1,332,853 cysB b4522: yciX_1 - hypothetical protein (NCBI), at 1,333,184 to 1,333,312 _1 b4523: yciX - hypothetical protein (RefSeq), at 1,333,315 to 1,333,482 yciX b1276: acnA - aconitate hydratase (NCBI), at 1,333,855 to 1,336,530 acnA Position (kb) 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1332.440 kb on - strandat 1332.922 kb on + strandat 1332.930 kb on - strandat 1332.930 kb on - strandat 1333.156 kb on + strandat 1333.158 kb on - strandat 1333.160 kb on - strandat 1333.197 kb on + strand, within yciX_1at 1333.198 kb on + strand, within yciX_1at 1333.275 kb on - strand, within yciX_1at 1333.286 kb on - strand, within yciX_1at 1333.286 kb on - strand, within yciX_1at 1333.301 kb on + strandat 1333.301 kb on + strandat 1333.311 kb on + strandat 1333.320 kb on - strandat 1333.320 kb on - strandat 1333.322 kb on + strandat 1333.322 kb on + strandat 1333.345 kb on + strand, within yciXat 1333.345 kb on + strand, within yciXat 1333.345 kb on + strand, within yciXat 1333.349 kb on + strand, within yciXat 1333.418 kb on + strand, within yciXat 1333.420 kb on - strand, within yciXat 1333.434 kb on - strand, within yciXat 1333.450 kb on - strand, within yciXat 1333.450 kb on - strand, within yciXat 1333.525 kb on + strandat 1333.538 kb on + strandat 1333.578 kb on + strandat 1333.606 kb on - strandat 1333.606 kb on - strandat 1333.606 kb on - strandat 1333.606 kb on - strandat 1333.630 kb on - strandat 1333.655 kb on + strandat 1333.670 kb on + strandat 1333.670 kb on + strandat 1333.678 kb on - strandat 1333.794 kb on + strandat 1333.794 kb on + strandat 1333.818 kb on + strandat 1333.838 kb on + strandat 1333.841 kb on - strandat 1333.847 kb on - strandat 1333.873 kb on - strandat 1333.932 kb on - strandat 1334.080 kb on - strandat 1334.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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1,332,440 - -0.8
1,332,922 + +0.8
1,332,930 - -0.4
1,332,930 - -0.7
1,333,156 + -0.6
1,333,158 - +1.8
1,333,160 - -0.7
1,333,197 + yciX_1 b4522 0.10 +1.1
1,333,198 + yciX_1 b4522 0.11 +1.3
1,333,275 - yciX_1 b4522 0.71 +0.4
1,333,286 - yciX_1 b4522 0.79 +1.5
1,333,286 - yciX_1 b4522 0.79 +2.1
1,333,301 + +0.5
1,333,301 + +0.4
1,333,311 + -1.0
1,333,320 - +0.8
1,333,320 - +1.8
1,333,322 + -0.0
1,333,322 + +1.8
1,333,345 + yciX b4523 0.18 +0.5
1,333,345 + yciX b4523 0.18 -0.2
1,333,345 + yciX b4523 0.18 +0.5
1,333,349 + yciX b4523 0.20 -0.4
1,333,418 + yciX b4523 0.61 -0.1
1,333,420 - yciX b4523 0.62 +0.8
1,333,434 - yciX b4523 0.71 +0.8
1,333,450 - yciX b4523 0.80 +0.8
1,333,450 - yciX b4523 0.80 -2.0
1,333,525 + -1.2
1,333,538 + +0.5
1,333,578 + +1.4
1,333,606 - +0.0
1,333,606 - +2.4
1,333,606 - +0.0
1,333,606 - +0.5
1,333,630 - -1.2
1,333,655 + -0.8
1,333,670 + -2.3
1,333,670 + -2.2
1,333,678 - +0.8
1,333,794 + -0.0
1,333,794 + -0.5
1,333,818 + +1.2
1,333,838 + +2.0
1,333,841 - -0.3
1,333,847 - +0.4
1,333,873 - +1.7
1,333,932 - -0.1
1,334,080 - -2.1
1,334,080 - +0.8

Or see this region's nucleotide sequence