Strain Fitness in Escherichia coli BW25113 around b4234
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,454,348 | - | mpl | b4233 | 0.39 | -0.2 |
4,454,385 | + | mpl | b4233 | 0.42 | -1.3 |
4,454,506 | + | mpl | b4233 | 0.51 | -0.1 |
4,454,508 | + | mpl | b4233 | 0.51 | -0.3 |
4,454,508 | + | mpl | b4233 | 0.51 | -1.5 |
4,454,624 | - | mpl | b4233 | 0.59 | -0.6 |
4,454,624 | - | mpl | b4233 | 0.59 | -0.8 |
4,454,697 | + | mpl | b4233 | 0.65 | -0.1 |
4,454,783 | + | mpl | b4233 | 0.71 | -0.9 |
4,454,896 | - | mpl | b4233 | 0.79 | -0.8 |
4,454,932 | + | mpl | b4233 | 0.82 | +1.1 |
4,454,944 | - | mpl | b4233 | 0.83 | +0.3 |
4,454,944 | - | mpl | b4233 | 0.83 | -1.9 |
4,454,968 | - | mpl | b4233 | 0.84 | +0.9 |
4,455,002 | - | mpl | b4233 | 0.87 | -0.6 |
4,455,020 | - | mpl | b4233 | 0.88 | -0.6 |
4,455,031 | - | mpl | b4233 | 0.89 | -0.9 |
4,455,047 | - | -1.3 | |||
4,455,067 | + | -0.9 | |||
4,455,067 | + | -0.9 | |||
4,455,093 | + | -1.5 | |||
4,455,129 | + | -0.8 | |||
4,455,262 | - | -0.4 | |||
4,455,351 | + | +1.4 | |||
4,455,469 | - | yjgA | b4234 | 0.24 | +0.6 |
4,455,483 | - | yjgA | b4234 | 0.26 | +0.4 |
4,455,582 | - | yjgA | b4234 | 0.44 | +0.1 |
4,455,628 | - | yjgA | b4234 | 0.53 | +1.4 |
4,455,628 | - | yjgA | b4234 | 0.53 | +0.5 |
4,455,695 | - | yjgA | b4234 | 0.65 | +0.5 |
4,455,727 | - | yjgA | b4234 | 0.71 | +0.5 |
4,455,924 | + | +1.2 | |||
4,455,960 | - | -0.5 | |||
4,455,971 | + | +0.7 | |||
4,456,031 | - | -1.8 | |||
4,456,031 | - | +1.6 | |||
4,456,053 | - | -0.3 | |||
4,456,053 | - | -0.5 | |||
4,456,054 | + | -1.0 | |||
4,456,062 | - | -0.2 | |||
4,456,062 | - | -1.1 | |||
4,456,083 | - | +0.3 | |||
4,456,093 | - | -0.4 | |||
4,456,131 | + | pmbA | b4235 | 0.11 | -0.1 |
4,456,132 | + | pmbA | b4235 | 0.11 | -0.7 |
4,456,132 | + | pmbA | b4235 | 0.11 | -0.5 |
4,456,253 | + | pmbA | b4235 | 0.20 | -0.2 |
4,456,261 | - | pmbA | b4235 | 0.21 | +0.0 |
4,456,263 | - | pmbA | b4235 | 0.21 | +0.9 |
4,456,263 | - | pmbA | b4235 | 0.21 | -0.0 |
4,456,281 | + | pmbA | b4235 | 0.22 | +0.5 |
4,456,281 | + | pmbA | b4235 | 0.22 | +0.1 |
4,456,367 | - | pmbA | b4235 | 0.28 | -0.5 |
4,456,367 | - | pmbA | b4235 | 0.28 | +0.2 |
4,456,396 | + | pmbA | b4235 | 0.31 | -0.3 |
4,456,396 | + | pmbA | b4235 | 0.31 | +0.1 |
4,456,409 | + | pmbA | b4235 | 0.32 | +0.4 |
4,456,409 | + | pmbA | b4235 | 0.32 | -0.7 |
4,456,417 | - | pmbA | b4235 | 0.32 | -0.2 |
4,456,448 | + | pmbA | b4235 | 0.34 | +0.4 |
4,456,448 | + | pmbA | b4235 | 0.34 | +1.6 |
4,456,554 | - | pmbA | b4235 | 0.42 | +0.1 |
4,456,591 | + | pmbA | b4235 | 0.45 | +0.2 |
4,456,601 | + | pmbA | b4235 | 0.46 | -0.3 |
4,456,612 | - | pmbA | b4235 | 0.47 | -0.2 |
4,456,618 | - | pmbA | b4235 | 0.47 | -0.6 |
4,456,687 | + | pmbA | b4235 | 0.52 | -0.0 |
4,456,703 | + | pmbA | b4235 | 0.53 | -1.2 |
4,456,703 | + | pmbA | b4235 | 0.53 | -0.5 |
4,456,711 | - | pmbA | b4235 | 0.54 | +0.7 |
4,456,711 | - | pmbA | b4235 | 0.54 | +0.2 |
4,456,771 | + | pmbA | b4235 | 0.58 | +1.1 |
4,456,775 | - | pmbA | b4235 | 0.59 | +2.4 |
4,456,775 | - | pmbA | b4235 | 0.59 | -0.2 |
Or see this region's nucleotide sequence