Strain Fitness in Escherichia coli BW25113 around b3471

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzntA and yhhP are separated by 101 nucleotidesyhhP and yhhQ are separated by 220 nucleotidesyhhQ and b3472 are separated by 72 nucleotidesb3472 and yhhS are separated by 3 nucleotides b3469: zntA - zinc, cobalt and lead efflux system (NCBI), at 3,604,474 to 3,606,672 zntA b3470: yhhP - cell developmental protein SirA (NCBI), at 3,606,774 to 3,607,019 yhhP b3471: yhhQ - conserved inner membrane protein (NCBI), at 3,607,240 to 3,607,905 yhhQ b3472: b3472 - orf, hypothetical protein (VIMSS), at 3,607,978 to 3,608,535 b3472 b3473: yhhS - putative transport (VIMSS), at 3,608,539 to 3,609,756 yhhS Position (kb) 3607 3608Strain fitness (log2 ratio) -2 -1 0 1 2at 3606.298 kb on + strand, within zntAat 3606.326 kb on + strand, within zntAat 3606.331 kb on + strand, within zntAat 3606.350 kb on - strand, within zntAat 3606.350 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.367 kb on - strand, within zntAat 3606.383 kb on - strand, within zntAat 3606.383 kb on - strand, within zntAat 3606.414 kb on + strand, within zntAat 3606.414 kb on + strand, within zntAat 3606.448 kb on + strand, within zntAat 3606.448 kb on + strand, within zntAat 3606.454 kb on + strandat 3606.454 kb on + strandat 3606.468 kb on + strandat 3606.478 kb on + strandat 3606.478 kb on + strandat 3606.590 kb on + strandat 3606.602 kb on - strandat 3606.629 kb on - strandat 3606.631 kb on - strandat 3606.636 kb on - strandat 3606.667 kb on + strandat 3606.713 kb on - strandat 3606.713 kb on - strandat 3606.723 kb on - strandat 3606.723 kb on - strandat 3606.723 kb on - strandat 3606.727 kb on + strandat 3606.727 kb on + strandat 3606.727 kb on + strandat 3606.735 kb on - strandat 3606.735 kb on - strandat 3606.735 kb on - strandat 3606.736 kb on - strandat 3606.775 kb on - strandat 3606.775 kb on - strandat 3606.987 kb on + strand, within yhhPat 3606.997 kb on + strandat 3607.058 kb on - strandat 3607.059 kb on - strandat 3607.175 kb on - strandat 3607.177 kb on + strandat 3607.177 kb on + strandat 3607.214 kb on - strandat 3607.274 kb on - strandat 3607.274 kb on - strandat 3607.411 kb on - strand, within yhhQat 3607.435 kb on + strand, within yhhQat 3607.447 kb on + strand, within yhhQat 3607.466 kb on + strand, within yhhQat 3607.466 kb on + strand, within yhhQat 3607.482 kb on - strand, within yhhQat 3607.511 kb on - strand, within yhhQat 3607.542 kb on + strand, within yhhQat 3607.603 kb on + strand, within yhhQat 3607.603 kb on + strand, within yhhQat 3607.660 kb on - strand, within yhhQat 3607.660 kb on - strand, within yhhQat 3607.673 kb on + strand, within yhhQat 3607.725 kb on + strand, within yhhQat 3607.725 kb on + strand, within yhhQat 3607.753 kb on + strand, within yhhQat 3607.753 kb on + strand, within yhhQat 3607.954 kb on - strandat 3608.011 kb on - strandat 3608.016 kb on + strandat 3608.016 kb on + strandat 3608.051 kb on - strandat 3608.062 kb on + strand, within b3472at 3608.067 kb on + strand, within b3472at 3608.075 kb on - strand, within b3472at 3608.075 kb on - strand, within b3472at 3608.100 kb on - strand, within b3472at 3608.100 kb on - strand, within b3472at 3608.102 kb on + strand, within b3472at 3608.102 kb on + strand, within b3472at 3608.124 kb on + strand, within b3472at 3608.154 kb on - strand, within b3472at 3608.154 kb on - strand, within b3472at 3608.230 kb on - strand, within b3472at 3608.238 kb on - strand, within b3472at 3608.299 kb on - strand, within b3472at 3608.306 kb on - strand, within b3472at 3608.306 kb on - strand, within b3472at 3608.344 kb on + strand, within b3472at 3608.344 kb on + strand, within b3472at 3608.386 kb on - strand, within b3472at 3608.386 kb on - strand, within b3472at 3608.419 kb on + strand, within b3472at 3608.450 kb on - strand, within b3472at 3608.450 kb on - strand, within b3472at 3608.536 kb on + strandat 3608.556 kb on + strandat 3608.566 kb on + strandat 3608.689 kb on + strand, within yhhSat 3608.772 kb on + strand, within yhhSat 3608.779 kb on + strand, within yhhSat 3608.779 kb on + strand, within yhhSat 3608.813 kb on - strand, within yhhSat 3608.864 kb on + strand, within yhhSat 3608.876 kb on - strand, within yhhS

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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3,606,298 + zntA b3469 0.83 -2.2
3,606,326 + zntA b3469 0.84 -0.2
3,606,331 + zntA b3469 0.84 -0.5
3,606,350 - zntA b3469 0.85 -1.9
3,606,350 - zntA b3469 0.85 -0.5
3,606,367 - zntA b3469 0.86 -1.2
3,606,367 - zntA b3469 0.86 -0.9
3,606,367 - zntA b3469 0.86 +0.1
3,606,383 - zntA b3469 0.87 +1.1
3,606,383 - zntA b3469 0.87 +2.1
3,606,414 + zntA b3469 0.88 -1.5
3,606,414 + zntA b3469 0.88 -1.2
3,606,448 + zntA b3469 0.90 -1.2
3,606,448 + zntA b3469 0.90 -1.2
3,606,454 + +0.1
3,606,454 + -0.9
3,606,468 + +1.6
3,606,478 + -0.9
3,606,478 + -0.9
3,606,590 + -2.2
3,606,602 - -1.7
3,606,629 - +0.1
3,606,631 - -1.9
3,606,636 - +0.8
3,606,667 + -0.1
3,606,713 - -0.5
3,606,713 - +1.1
3,606,723 - -0.6
3,606,723 - -0.4
3,606,723 - -0.5
3,606,727 + -0.3
3,606,727 + -0.1
3,606,727 + -2.0
3,606,735 - +0.3
3,606,735 - +0.3
3,606,735 - +0.4
3,606,736 - +0.3
3,606,775 - +1.2
3,606,775 - +0.7
3,606,987 + yhhP b3470 0.87 +1.1
3,606,997 + -0.6
3,607,058 - +0.8
3,607,059 - +0.2
3,607,175 - -0.5
3,607,177 + -0.6
3,607,177 + -0.2
3,607,214 - -0.7
3,607,274 - -1.0
3,607,274 - -0.4
3,607,411 - yhhQ b3471 0.26 +0.3
3,607,435 + yhhQ b3471 0.29 -0.1
3,607,447 + yhhQ b3471 0.31 -0.1
3,607,466 + yhhQ b3471 0.34 -1.0
3,607,466 + yhhQ b3471 0.34 -0.1
3,607,482 - yhhQ b3471 0.36 +0.0
3,607,511 - yhhQ b3471 0.41 +0.2
3,607,542 + yhhQ b3471 0.45 -0.1
3,607,603 + yhhQ b3471 0.55 -0.2
3,607,603 + yhhQ b3471 0.55 -0.5
3,607,660 - yhhQ b3471 0.63 +0.0
3,607,660 - yhhQ b3471 0.63 -1.1
3,607,673 + yhhQ b3471 0.65 -0.0
3,607,725 + yhhQ b3471 0.73 -2.3
3,607,725 + yhhQ b3471 0.73 -1.7
3,607,753 + yhhQ b3471 0.77 -1.5
3,607,753 + yhhQ b3471 0.77 -1.3
3,607,954 - +0.9
3,608,011 - -1.1
3,608,016 + +0.6
3,608,016 + +0.1
3,608,051 - -1.1
3,608,062 + b3472 b3472 0.15 +0.7
3,608,067 + b3472 b3472 0.16 +0.7
3,608,075 - b3472 b3472 0.17 +0.3
3,608,075 - b3472 b3472 0.17 -2.3
3,608,100 - b3472 b3472 0.22 -0.3
3,608,100 - b3472 b3472 0.22 +0.6
3,608,102 + b3472 b3472 0.22 -0.1
3,608,102 + b3472 b3472 0.22 +1.0
3,608,124 + b3472 b3472 0.26 +0.5
3,608,154 - b3472 b3472 0.32 -0.3
3,608,154 - b3472 b3472 0.32 -1.4
3,608,230 - b3472 b3472 0.45 +0.2
3,608,238 - b3472 b3472 0.47 +1.0
3,608,299 - b3472 b3472 0.58 +0.2
3,608,306 - b3472 b3472 0.59 +0.5
3,608,306 - b3472 b3472 0.59 +0.6
3,608,344 + b3472 b3472 0.66 +0.5
3,608,344 + b3472 b3472 0.66 +0.7
3,608,386 - b3472 b3472 0.73 +1.2
3,608,386 - b3472 b3472 0.73 -1.2
3,608,419 + b3472 b3472 0.79 +1.0
3,608,450 - b3472 b3472 0.85 -0.3
3,608,450 - b3472 b3472 0.85 +1.0
3,608,536 + -0.1
3,608,556 + -0.4
3,608,566 + -0.4
3,608,689 + yhhS b3473 0.12 +0.9
3,608,772 + yhhS b3473 0.19 +0.1
3,608,779 + yhhS b3473 0.20 -1.3
3,608,779 + yhhS b3473 0.20 +1.0
3,608,813 - yhhS b3473 0.22 +0.4
3,608,864 + yhhS b3473 0.27 +0.3
3,608,876 - yhhS b3473 0.28 +0.7

Or see this region's nucleotide sequence