Strain Fitness in Escherichia coli BW25113 around b3471
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,606,298 | + | zntA | b3469 | 0.83 | -2.2 |
3,606,326 | + | zntA | b3469 | 0.84 | -0.2 |
3,606,331 | + | zntA | b3469 | 0.84 | -0.5 |
3,606,350 | - | zntA | b3469 | 0.85 | -1.9 |
3,606,350 | - | zntA | b3469 | 0.85 | -0.5 |
3,606,367 | - | zntA | b3469 | 0.86 | -1.2 |
3,606,367 | - | zntA | b3469 | 0.86 | -0.9 |
3,606,367 | - | zntA | b3469 | 0.86 | +0.1 |
3,606,383 | - | zntA | b3469 | 0.87 | +1.1 |
3,606,383 | - | zntA | b3469 | 0.87 | +2.1 |
3,606,414 | + | zntA | b3469 | 0.88 | -1.5 |
3,606,414 | + | zntA | b3469 | 0.88 | -1.2 |
3,606,448 | + | zntA | b3469 | 0.90 | -1.2 |
3,606,448 | + | zntA | b3469 | 0.90 | -1.2 |
3,606,454 | + | +0.1 | |||
3,606,454 | + | -0.9 | |||
3,606,468 | + | +1.6 | |||
3,606,478 | + | -0.9 | |||
3,606,478 | + | -0.9 | |||
3,606,590 | + | -2.2 | |||
3,606,602 | - | -1.7 | |||
3,606,629 | - | +0.1 | |||
3,606,631 | - | -1.9 | |||
3,606,636 | - | +0.8 | |||
3,606,667 | + | -0.1 | |||
3,606,713 | - | -0.5 | |||
3,606,713 | - | +1.1 | |||
3,606,723 | - | -0.6 | |||
3,606,723 | - | -0.4 | |||
3,606,723 | - | -0.5 | |||
3,606,727 | + | -0.3 | |||
3,606,727 | + | -0.1 | |||
3,606,727 | + | -2.0 | |||
3,606,735 | - | +0.3 | |||
3,606,735 | - | +0.3 | |||
3,606,735 | - | +0.4 | |||
3,606,736 | - | +0.3 | |||
3,606,775 | - | +1.2 | |||
3,606,775 | - | +0.7 | |||
3,606,987 | + | yhhP | b3470 | 0.87 | +1.1 |
3,606,997 | + | -0.6 | |||
3,607,058 | - | +0.8 | |||
3,607,059 | - | +0.2 | |||
3,607,175 | - | -0.5 | |||
3,607,177 | + | -0.6 | |||
3,607,177 | + | -0.2 | |||
3,607,214 | - | -0.7 | |||
3,607,274 | - | -1.0 | |||
3,607,274 | - | -0.4 | |||
3,607,411 | - | yhhQ | b3471 | 0.26 | +0.3 |
3,607,435 | + | yhhQ | b3471 | 0.29 | -0.1 |
3,607,447 | + | yhhQ | b3471 | 0.31 | -0.1 |
3,607,466 | + | yhhQ | b3471 | 0.34 | -1.0 |
3,607,466 | + | yhhQ | b3471 | 0.34 | -0.1 |
3,607,482 | - | yhhQ | b3471 | 0.36 | +0.0 |
3,607,511 | - | yhhQ | b3471 | 0.41 | +0.2 |
3,607,542 | + | yhhQ | b3471 | 0.45 | -0.1 |
3,607,603 | + | yhhQ | b3471 | 0.55 | -0.2 |
3,607,603 | + | yhhQ | b3471 | 0.55 | -0.5 |
3,607,660 | - | yhhQ | b3471 | 0.63 | +0.0 |
3,607,660 | - | yhhQ | b3471 | 0.63 | -1.1 |
3,607,673 | + | yhhQ | b3471 | 0.65 | -0.0 |
3,607,725 | + | yhhQ | b3471 | 0.73 | -2.3 |
3,607,725 | + | yhhQ | b3471 | 0.73 | -1.7 |
3,607,753 | + | yhhQ | b3471 | 0.77 | -1.5 |
3,607,753 | + | yhhQ | b3471 | 0.77 | -1.3 |
3,607,954 | - | +0.9 | |||
3,608,011 | - | -1.1 | |||
3,608,016 | + | +0.6 | |||
3,608,016 | + | +0.1 | |||
3,608,051 | - | -1.1 | |||
3,608,062 | + | b3472 | b3472 | 0.15 | +0.7 |
3,608,067 | + | b3472 | b3472 | 0.16 | +0.7 |
3,608,075 | - | b3472 | b3472 | 0.17 | +0.3 |
3,608,075 | - | b3472 | b3472 | 0.17 | -2.3 |
3,608,100 | - | b3472 | b3472 | 0.22 | -0.3 |
3,608,100 | - | b3472 | b3472 | 0.22 | +0.6 |
3,608,102 | + | b3472 | b3472 | 0.22 | -0.1 |
3,608,102 | + | b3472 | b3472 | 0.22 | +1.0 |
3,608,124 | + | b3472 | b3472 | 0.26 | +0.5 |
3,608,154 | - | b3472 | b3472 | 0.32 | -0.3 |
3,608,154 | - | b3472 | b3472 | 0.32 | -1.4 |
3,608,230 | - | b3472 | b3472 | 0.45 | +0.2 |
3,608,238 | - | b3472 | b3472 | 0.47 | +1.0 |
3,608,299 | - | b3472 | b3472 | 0.58 | +0.2 |
3,608,306 | - | b3472 | b3472 | 0.59 | +0.5 |
3,608,306 | - | b3472 | b3472 | 0.59 | +0.6 |
3,608,344 | + | b3472 | b3472 | 0.66 | +0.5 |
3,608,344 | + | b3472 | b3472 | 0.66 | +0.7 |
3,608,386 | - | b3472 | b3472 | 0.73 | +1.2 |
3,608,386 | - | b3472 | b3472 | 0.73 | -1.2 |
3,608,419 | + | b3472 | b3472 | 0.79 | +1.0 |
3,608,450 | - | b3472 | b3472 | 0.85 | -0.3 |
3,608,450 | - | b3472 | b3472 | 0.85 | +1.0 |
3,608,536 | + | -0.1 | |||
3,608,556 | + | -0.4 | |||
3,608,566 | + | -0.4 | |||
3,608,689 | + | yhhS | b3473 | 0.12 | +0.9 |
3,608,772 | + | yhhS | b3473 | 0.19 | +0.1 |
3,608,779 | + | yhhS | b3473 | 0.20 | -1.3 |
3,608,779 | + | yhhS | b3473 | 0.20 | +1.0 |
3,608,813 | - | yhhS | b3473 | 0.22 | +0.4 |
3,608,864 | + | yhhS | b3473 | 0.27 | +0.3 |
3,608,876 | - | yhhS | b3473 | 0.28 | +0.7 |
Or see this region's nucleotide sequence