Strain Fitness in Escherichia coli BW25113 around b2286
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,399,113 | - | nuoF | b2284 | 0.65 | +0.5 |
2,399,283 | - | nuoF | b2284 | 0.78 | +3.1 |
2,399,293 | - | nuoF | b2284 | 0.79 | +0.7 |
2,399,314 | - | nuoF | b2284 | 0.80 | +2.6 |
2,399,405 | - | nuoF | b2284 | 0.87 | +2.2 |
2,399,405 | - | nuoF | b2284 | 0.87 | +0.9 |
2,399,406 | - | nuoF | b2284 | 0.87 | -0.1 |
2,399,461 | + | -1.0 | |||
2,399,461 | + | +1.3 | |||
2,399,508 | - | +4.3 | |||
2,399,626 | + | +1.9 | |||
2,399,626 | + | nuoE | b2285 | 0.10 | +0.5 |
2,399,725 | + | nuoE | b2285 | 0.30 | +1.1 |
2,399,863 | - | nuoE | b2285 | 0.58 | +1.9 |
2,399,948 | - | nuoE | b2285 | 0.75 | -1.9 |
2,399,972 | + | nuoE | b2285 | 0.79 | +2.7 |
2,400,031 | - | +2.0 | |||
2,400,113 | + | +1.3 | |||
2,400,113 | + | +0.0 | |||
2,400,221 | - | +0.9 | |||
2,400,221 | - | -0.1 | |||
2,400,254 | + | +0.7 | |||
2,400,254 | - | -1.7 | |||
2,400,327 | - | nuoC | b2286 | 0.14 | +3.7 |
2,400,349 | - | nuoC | b2286 | 0.15 | +0.3 |
2,400,357 | - | nuoC | b2286 | 0.16 | +0.1 |
2,400,431 | + | nuoC | b2286 | 0.20 | +0.7 |
2,400,565 | - | nuoC | b2286 | 0.27 | +1.1 |
2,400,683 | - | nuoC | b2286 | 0.34 | -1.1 |
2,400,683 | - | nuoC | b2286 | 0.34 | -0.4 |
2,401,060 | + | nuoC | b2286 | 0.55 | +0.3 |
2,401,073 | - | nuoC | b2286 | 0.56 | +0.1 |
2,401,073 | - | nuoC | b2286 | 0.56 | +0.1 |
2,401,078 | - | nuoC | b2286 | 0.56 | +0.9 |
2,401,197 | + | nuoC | b2286 | 0.63 | +0.5 |
2,401,420 | - | nuoC | b2286 | 0.75 | +1.4 |
2,401,492 | + | nuoC | b2286 | 0.79 | -0.0 |
2,401,492 | + | nuoC | b2286 | 0.79 | +2.1 |
2,401,504 | - | nuoC | b2286 | 0.80 | -0.1 |
2,401,625 | + | nuoC | b2286 | 0.86 | +1.3 |
2,401,665 | + | nuoC | b2286 | 0.89 | -0.1 |
2,401,730 | - | +0.3 | |||
2,401,730 | - | -0.0 | |||
2,401,732 | - | +2.0 | |||
2,401,732 | - | +2.8 | |||
2,401,762 | - | +0.6 | |||
2,401,767 | - | +1.1 | |||
2,402,000 | + | +0.9 | |||
2,402,085 | - | nuoB | b2287 | 0.17 | -1.1 |
2,402,169 | + | nuoB | b2287 | 0.30 | +0.4 |
2,402,169 | + | nuoB | b2287 | 0.30 | -1.4 |
2,402,179 | - | nuoB | b2287 | 0.31 | +0.5 |
2,402,212 | - | nuoB | b2287 | 0.36 | -0.4 |
2,402,284 | + | nuoB | b2287 | 0.47 | +1.3 |
2,402,378 | - | nuoB | b2287 | 0.61 | +0.4 |
2,402,386 | - | nuoB | b2287 | 0.62 | -0.1 |
2,402,386 | - | nuoB | b2287 | 0.62 | -1.9 |
2,402,434 | + | nuoB | b2287 | 0.70 | +1.0 |
2,402,434 | + | nuoB | b2287 | 0.70 | +1.6 |
2,402,583 | + | +2.3 | |||
2,402,621 | - | -0.1 | |||
2,402,624 | + | +1.7 | |||
2,402,662 | + | +1.2 | |||
2,402,662 | + | +0.7 | |||
2,402,665 | + | +0.3 | |||
2,402,665 | + | +0.9 | |||
2,402,694 | - | -1.5 | |||
2,402,723 | + | nuoA | b2288 | 0.16 | -1.1 |
2,402,723 | + | nuoA | b2288 | 0.16 | +1.0 |
2,402,745 | + | +1.3 | |||
2,402,805 | - | nuoA | b2288 | 0.35 | -1.1 |
2,402,805 | - | nuoA | b2288 | 0.35 | -1.0 |
2,402,819 | + | nuoA | b2288 | 0.38 | +0.2 |
Or see this region's nucleotide sequence