Strain Fitness in Escherichia coli BW25113 around b1527

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneJ and yneK are separated by 77 nucleotidesyneK and ydeA are separated by 149 nucleotides b1526: yneJ - predicted DNA-binding transcriptional regulator (NCBI), at 1,612,828 to 1,613,709 yneJ b1527: yneK - hypothetical protein (NCBI), at 1,613,787 to 1,614,902 yneK b1528: ydeA - sugar efflux transporter (NCBI), at 1,615,052 to 1,616,242 ydeA Position (kb) 1613 1614 1615Strain fitness (log2 ratio) -1 0 1 2at 1612.999 kb on + strand, within yneJat 1612.999 kb on + strand, within yneJat 1613.337 kb on - strand, within yneJat 1613.373 kb on + strand, within yneJat 1613.444 kb on + strand, within yneJat 1613.563 kb on + strand, within yneJat 1613.695 kb on - strandat 1613.695 kb on - strandat 1613.743 kb on + strandat 1613.743 kb on + strandat 1613.750 kb on + strandat 1613.769 kb on + strandat 1613.774 kb on + strandat 1613.813 kb on + strandat 1614.197 kb on - strand, within yneKat 1614.356 kb on - strand, within yneKat 1614.567 kb on - strand, within yneKat 1614.730 kb on - strand, within yneKat 1614.730 kb on - strand, within yneKat 1614.774 kb on - strand, within yneKat 1614.810 kb on + strandat 1615.094 kb on - strandat 1615.094 kb on - strandat 1615.131 kb on - strandat 1615.131 kb on - strandat 1615.269 kb on + strand, within ydeAat 1615.269 kb on + strand, within ydeAat 1615.438 kb on + strand, within ydeAat 1615.468 kb on + strand, within ydeAat 1615.468 kb on + strand, within ydeAat 1615.572 kb on + strand, within ydeAat 1615.634 kb on - strand, within ydeAat 1615.634 kb on - strand, within ydeAat 1615.704 kb on - strand, within ydeAat 1615.741 kb on - strand, within ydeAat 1615.741 kb on - strand, within ydeA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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1,612,999 + yneJ b1526 0.19 +0.5
1,612,999 + yneJ b1526 0.19 +0.7
1,613,337 - yneJ b1526 0.58 -0.6
1,613,373 + yneJ b1526 0.62 +0.0
1,613,444 + yneJ b1526 0.70 -0.0
1,613,563 + yneJ b1526 0.83 -0.2
1,613,695 - +0.7
1,613,695 - +0.7
1,613,743 + -0.3
1,613,743 + -0.9
1,613,750 + +0.7
1,613,769 + -1.3
1,613,774 + -0.3
1,613,813 + +1.3
1,614,197 - yneK b1527 0.37 +0.7
1,614,356 - yneK b1527 0.51 +0.7
1,614,567 - yneK b1527 0.70 +0.7
1,614,730 - yneK b1527 0.84 +1.7
1,614,730 - yneK b1527 0.84 +1.8
1,614,774 - yneK b1527 0.88 +0.8
1,614,810 + -0.0
1,615,094 - +0.7
1,615,094 - +0.7
1,615,131 - +0.4
1,615,131 - +0.1
1,615,269 + ydeA b1528 0.18 +0.3
1,615,269 + ydeA b1528 0.18 +0.7
1,615,438 + ydeA b1528 0.32 -0.6
1,615,468 + ydeA b1528 0.35 +0.0
1,615,468 + ydeA b1528 0.35 +0.1
1,615,572 + ydeA b1528 0.44 -0.3
1,615,634 - ydeA b1528 0.49 -1.2
1,615,634 - ydeA b1528 0.49 +2.3
1,615,704 - ydeA b1528 0.55 +0.2
1,615,741 - ydeA b1528 0.58 -1.0
1,615,741 - ydeA b1528 0.58 -0.2

Or see this region's nucleotide sequence