Strain Fitness in Escherichia coli BW25113 around b1493
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,567,795 | - | gadC | b1492 | 0.53 | -0.3 |
1,567,894 | + | gadC | b1492 | 0.60 | +0.1 |
1,567,894 | + | gadC | b1492 | 0.60 | +1.4 |
1,567,920 | - | gadC | b1492 | 0.61 | +0.1 |
1,567,987 | - | gadC | b1492 | 0.66 | +0.0 |
1,568,041 | + | gadC | b1492 | 0.69 | -0.1 |
1,568,119 | - | gadC | b1492 | 0.74 | -0.1 |
1,568,119 | - | gadC | b1492 | 0.74 | +1.2 |
1,568,164 | + | gadC | b1492 | 0.77 | -1.3 |
1,568,186 | - | gadC | b1492 | 0.79 | +1.2 |
1,568,186 | - | gadC | b1492 | 0.79 | -0.3 |
1,568,280 | - | gadC | b1492 | 0.85 | +1.1 |
1,568,280 | - | gadC | b1492 | 0.85 | +2.1 |
1,568,387 | - | +0.7 | |||
1,568,551 | + | +0.6 | |||
1,568,658 | - | -2.5 | |||
1,568,658 | - | -0.3 | |||
1,568,690 | - | +0.0 | |||
1,569,776 | + | gadB | b1493 | 0.79 | +1.8 |
1,570,028 | + | +0.7 | |||
1,570,028 | + | +0.7 | |||
1,570,123 | + | +0.7 | |||
1,570,123 | + | +1.1 | |||
1,570,423 | - | +0.7 | |||
1,570,503 | - | -0.8 | |||
1,570,503 | - | -0.1 | |||
1,570,513 | - | -0.3 | |||
1,570,541 | - | -0.4 | |||
1,570,541 | - | +0.5 | |||
1,570,541 | - | -1.4 | |||
1,570,541 | - | -1.1 | |||
1,570,546 | - | -0.7 | |||
1,570,550 | - | -0.3 | |||
1,570,551 | - | +1.0 | |||
1,570,551 | - | +1.5 | |||
1,570,551 | - | +0.2 | |||
1,570,551 | - | +1.0 | |||
1,570,551 | - | +0.2 | |||
1,570,568 | - | +0.6 | |||
1,570,568 | - | -1.8 | |||
1,570,568 | - | +0.2 | |||
1,570,588 | - | -0.3 | |||
1,570,624 | - | -0.9 | |||
1,570,624 | - | -0.3 | |||
1,570,664 | + | +0.7 | |||
1,570,714 | + | pqqL | b1494 | 0.10 | -0.7 |
1,570,787 | + | pqqL | b1494 | 0.13 | +1.4 |
1,570,817 | + | pqqL | b1494 | 0.14 | -0.5 |
1,570,827 | + | pqqL | b1494 | 0.14 | +0.2 |
1,570,827 | + | pqqL | b1494 | 0.14 | -0.1 |
1,570,989 | + | pqqL | b1494 | 0.20 | +0.3 |
1,571,004 | + | pqqL | b1494 | 0.20 | +0.2 |
Or see this region's nucleotide sequence