Strain Fitness in Escherichia coli BW25113 around b1438
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,506,768 | - | +0.6 | |||
1,506,768 | - | +1.2 | |||
1,507,385 | - | yncN | b4532 | 0.42 | -0.2 |
1,507,407 | + | yncN | b4532 | 0.55 | +1.3 |
1,507,450 | + | yncN | b4532 | 0.79 | -0.2 |
1,507,631 | + | ydcQ | b1438 | 0.24 | -0.2 |
1,507,675 | + | ydcQ | b1438 | 0.34 | +1.2 |
1,507,702 | + | ydcQ | b1438 | 0.41 | +1.7 |
1,507,710 | - | ydcQ | b1438 | 0.43 | +1.0 |
1,507,761 | + | ydcQ | b1438 | 0.55 | -1.7 |
1,507,819 | + | ydcQ | b1438 | 0.69 | +0.4 |
1,508,082 | + | -2.0 | |||
1,508,082 | + | +0.8 | |||
1,508,230 | - | ydcR | b1439 | 0.14 | -2.6 |
1,508,233 | - | ydcR | b1439 | 0.15 | +0.3 |
1,508,314 | + | ydcR | b1439 | 0.20 | +1.7 |
1,508,314 | + | ydcR | b1439 | 0.20 | +0.6 |
1,508,403 | + | ydcR | b1439 | 0.27 | +0.6 |
1,508,479 | - | ydcR | b1439 | 0.32 | +1.1 |
1,508,509 | - | ydcR | b1439 | 0.34 | -0.2 |
1,508,632 | + | ydcR | b1439 | 0.43 | +0.1 |
1,508,820 | + | ydcR | b1439 | 0.56 | +0.5 |
1,508,820 | + | ydcR | b1439 | 0.56 | -0.2 |
Or see this region's nucleotide sequence