Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaU and ydaV are separated by 6 nucleotides ydaV and ydaW overlap by 29 nucleotides ydaW and rzpR are separated by 0 nucleotides rzpR and rzoR overlap by 245 nucleotides rzoR and trkG are separated by 196 nucleotides
b1359: ydaU - Rac prophage; conserved protein (NCBI), at 1,419,143 to 1,420,000
ydaU
b1360: ydaV - Rac prophage; predicted DNA replication protein (NCBI), at 1,420,007 to 1,420,753
ydaV
b1361: ydaW - orf, hypothetical protein (VIMSS), at 1,420,725 to 1,421,224
ydaW
b1362: rzpR - putative Rac prophage endopeptidase (VIMSS), at 1,421,225 to 1,421,668
rzpR
b4528: rzoR - Rac prophage; predicted lipoprotein (NCBI), at 1,421,424 to 1,421,609
rzoR
b1363: trkG - Rac prophage; potassium transporter subunit (NCBI), at 1,421,806 to 1,423,263
trkG
Position (kb)
1420
1421
1422 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1419.797 kb on + strand, within ydaU at 1419.910 kb on + strand, within ydaU at 1419.933 kb on - strand at 1419.988 kb on - strand at 1420.068 kb on - strand at 1420.436 kb on - strand, within ydaV at 1420.589 kb on + strand, within ydaV at 1420.831 kb on - strand, within ydaW at 1421.276 kb on - strand, within rzpR at 1421.536 kb on + strand at 1421.536 kb on + strand at 1421.602 kb on + strand at 1421.612 kb on + strand, within rzpR at 1421.612 kb on + strand, within rzpR at 1421.623 kb on + strand, within rzpR at 1421.623 kb on + strand, within rzpR at 1421.638 kb on + strand at 1421.638 kb on + strand at 1421.641 kb on + strand at 1421.672 kb on + strand at 1421.672 kb on + strand at 1421.813 kb on + strand at 1421.838 kb on + strand at 1421.838 kb on + strand at 1421.841 kb on + strand at 1421.841 kb on + strand at 1421.846 kb on + strand at 1421.847 kb on + strand at 1421.848 kb on + strand at 1421.848 kb on + strand at 1421.859 kb on + strand at 1421.875 kb on + strand at 1421.891 kb on + strand at 1421.895 kb on + strand at 1421.983 kb on + strand, within trkG
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,419,797 + ydaU b1359 0.76 +0.3 1,419,910 + ydaU b1359 0.89 +0.3 1,419,933 - -0.5 1,419,988 - -2.2 1,420,068 - -0.8 1,420,436 - ydaV b1360 0.57 +0.2 1,420,589 + ydaV b1360 0.78 +0.1 1,420,831 - ydaW b1361 0.21 +1.6 1,421,276 - rzpR b1362 0.11 -0.1 1,421,536 + -0.2 1,421,536 + -0.4 1,421,602 + +0.6 1,421,612 + rzpR b1362 0.87 -0.7 1,421,612 + rzpR b1362 0.87 -1.0 1,421,623 + rzpR b1362 0.90 +1.1 1,421,623 + rzpR b1362 0.90 -1.4 1,421,638 + -2.0 1,421,638 + +1.2 1,421,641 + +0.4 1,421,672 + +0.6 1,421,672 + +1.9 1,421,813 + +0.6 1,421,838 + -0.1 1,421,838 + +0.8 1,421,841 + +0.2 1,421,841 + -0.4 1,421,846 + +1.6 1,421,847 + +1.4 1,421,848 + +0.8 1,421,848 + -0.1 1,421,859 + -1.0 1,421,875 + +0.4 1,421,891 + +1.2 1,421,895 + +0.6 1,421,983 + trkG b1363 0.12 +0.6
Or see this region's nucleotide sequence