Strain Fitness in Escherichia coli BW25113 around b2276

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfbO and yfbP are separated by 58 nucleotidesyfbP and nuoN are separated by 83 nucleotidesnuoN and nuoM are separated by 6 nucleotides b2274: yfbO - predicted protein (RefSeq), at 2,386,657 to 2,387,079 yfbO b2275: yfbP - TPR-like repeats-containing protein (NCBI), at 2,387,138 to 2,387,986 yfbP b2276: nuoN - NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq), at 2,388,070 to 2,389,527 nuoN b2277: nuoM - NADH dehydrogenase subunit M (NCBI), at 2,389,534 to 2,391,063 nuoM Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2387.214 kb on + strandat 2387.237 kb on + strand, within yfbPat 2387.245 kb on - strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.269 kb on - strand, within yfbPat 2387.280 kb on + strand, within yfbPat 2387.294 kb on - strand, within yfbPat 2387.297 kb on + strand, within yfbPat 2387.354 kb on + strand, within yfbPat 2387.512 kb on + strand, within yfbPat 2387.545 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.671 kb on + strand, within yfbPat 2387.675 kb on + strand, within yfbPat 2387.677 kb on + strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.791 kb on + strand, within yfbPat 2387.843 kb on - strand, within yfbPat 2387.845 kb on + strand, within yfbPat 2387.853 kb on - strand, within yfbPat 2387.981 kb on + strandat 2387.981 kb on + strandat 2387.993 kb on + strandat 2388.014 kb on - strandat 2388.014 kb on - strandat 2388.125 kb on - strandat 2388.131 kb on - strandat 2388.131 kb on - strandat 2388.152 kb on - strandat 2388.187 kb on + strandat 2388.260 kb on - strand, within nuoNat 2388.314 kb on + strand, within nuoNat 2388.315 kb on + strand, within nuoNat 2388.320 kb on + strand, within nuoNat 2388.482 kb on + strand, within nuoNat 2388.482 kb on + strand, within nuoNat 2388.545 kb on + strand, within nuoNat 2388.665 kb on - strand, within nuoNat 2388.762 kb on - strand, within nuoNat 2388.773 kb on - strand, within nuoNat 2388.835 kb on + strand, within nuoNat 2388.999 kb on - strand, within nuoNat 2389.002 kb on + strand, within nuoNat 2389.005 kb on - strand, within nuoNat 2389.005 kb on - strand, within nuoNat 2389.007 kb on + strand, within nuoNat 2389.258 kb on - strand, within nuoNat 2389.295 kb on - strand, within nuoNat 2389.306 kb on - strand, within nuoNat 2389.306 kb on - strand, within nuoNat 2389.442 kb on + strandat 2389.461 kb on - strandat 2389.517 kb on + strandat 2389.539 kb on + strandat 2389.787 kb on - strand, within nuoMat 2389.817 kb on - strand, within nuoMat 2389.843 kb on - strand, within nuoMat 2389.938 kb on - strand, within nuoMat 2389.972 kb on - strand, within nuoMat 2390.000 kb on - strand, within nuoMat 2390.028 kb on - strand, within nuoMat 2390.028 kb on - strand, within nuoMat 2390.151 kb on - strand, within nuoMat 2390.151 kb on - strand, within nuoMat 2390.162 kb on + strand, within nuoMat 2390.162 kb on + strand, within nuoMat 2390.162 kb on + strand, within nuoMat 2390.170 kb on - strand, within nuoMat 2390.211 kb on + strand, within nuoMat 2390.230 kb on - strand, within nuoMat 2390.312 kb on + strand, within nuoMat 2390.341 kb on + strand, within nuoMat 2390.383 kb on - strand, within nuoMat 2390.411 kb on + strand, within nuoMat 2390.426 kb on - strand, within nuoMat 2390.454 kb on - strand, within nuoMat 2390.511 kb on - strand, within nuoMat 2390.516 kb on - strand, within nuoMat 2390.516 kb on - strand, within nuoMat 2390.522 kb on - strandat 2390.522 kb on - strand, within nuoM

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,387,214 + +0.5
2,387,237 + yfbP b2275 0.12 -1.8
2,387,245 - yfbP b2275 0.13 +0.5
2,387,266 + yfbP b2275 0.15 +0.3
2,387,266 + yfbP b2275 0.15 +1.1
2,387,269 - yfbP b2275 0.15 -0.3
2,387,280 + yfbP b2275 0.17 +0.1
2,387,294 - yfbP b2275 0.18 +0.7
2,387,297 + yfbP b2275 0.19 -0.4
2,387,354 + yfbP b2275 0.25 -0.5
2,387,512 + yfbP b2275 0.44 -0.8
2,387,545 - yfbP b2275 0.48 -1.7
2,387,600 - yfbP b2275 0.54 -0.1
2,387,600 - yfbP b2275 0.54 +0.7
2,387,640 + yfbP b2275 0.59 -0.9
2,387,640 + yfbP b2275 0.59 +0.3
2,387,671 + yfbP b2275 0.63 +0.0
2,387,675 + yfbP b2275 0.63 +0.2
2,387,677 + yfbP b2275 0.63 -0.1
2,387,687 - yfbP b2275 0.65 +0.1
2,387,687 - yfbP b2275 0.65 -0.3
2,387,791 + yfbP b2275 0.77 +0.6
2,387,843 - yfbP b2275 0.83 +0.4
2,387,845 + yfbP b2275 0.83 -0.8
2,387,853 - yfbP b2275 0.84 -0.8
2,387,981 + +0.3
2,387,981 + -0.3
2,387,993 + +0.5
2,388,014 - -1.7
2,388,014 - -0.2
2,388,125 - +0.5
2,388,131 - +1.5
2,388,131 - -0.3
2,388,152 - +1.5
2,388,187 + -1.1
2,388,260 - nuoN b2276 0.13 +1.5
2,388,314 + nuoN b2276 0.17 +0.1
2,388,315 + nuoN b2276 0.17 +0.5
2,388,320 + nuoN b2276 0.17 +0.4
2,388,482 + nuoN b2276 0.28 -0.3
2,388,482 + nuoN b2276 0.28 -1.0
2,388,545 + nuoN b2276 0.33 +0.1
2,388,665 - nuoN b2276 0.41 +0.6
2,388,762 - nuoN b2276 0.47 -0.1
2,388,773 - nuoN b2276 0.48 +1.7
2,388,835 + nuoN b2276 0.52 -1.1
2,388,999 - nuoN b2276 0.64 +0.9
2,389,002 + nuoN b2276 0.64 +0.1
2,389,005 - nuoN b2276 0.64 -0.5
2,389,005 - nuoN b2276 0.64 +1.1
2,389,007 + nuoN b2276 0.64 +0.5
2,389,258 - nuoN b2276 0.81 +0.4
2,389,295 - nuoN b2276 0.84 +0.9
2,389,306 - nuoN b2276 0.85 +1.5
2,389,306 - nuoN b2276 0.85 -0.1
2,389,442 + +0.7
2,389,461 - +2.8
2,389,517 + -1.1
2,389,539 + +0.6
2,389,787 - nuoM b2277 0.17 +0.9
2,389,817 - nuoM b2277 0.18 +0.5
2,389,843 - nuoM b2277 0.20 +1.2
2,389,938 - nuoM b2277 0.26 +3.1
2,389,972 - nuoM b2277 0.29 -1.1
2,390,000 - nuoM b2277 0.30 -0.5
2,390,028 - nuoM b2277 0.32 -0.5
2,390,028 - nuoM b2277 0.32 -0.5
2,390,151 - nuoM b2277 0.40 -0.3
2,390,151 - nuoM b2277 0.40 +1.9
2,390,162 + nuoM b2277 0.41 +1.1
2,390,162 + nuoM b2277 0.41 +0.5
2,390,162 + nuoM b2277 0.41 +0.6
2,390,170 - nuoM b2277 0.42 +1.3
2,390,211 + nuoM b2277 0.44 +2.1
2,390,230 - nuoM b2277 0.45 +0.4
2,390,312 + nuoM b2277 0.51 +2.5
2,390,341 + nuoM b2277 0.53 +1.5
2,390,383 - nuoM b2277 0.55 -0.5
2,390,411 + nuoM b2277 0.57 +0.8
2,390,426 - nuoM b2277 0.58 -1.1
2,390,454 - nuoM b2277 0.60 -0.7
2,390,511 - nuoM b2277 0.64 +0.7
2,390,516 - nuoM b2277 0.64 -0.3
2,390,516 - nuoM b2277 0.64 -1.1
2,390,522 - -0.1
2,390,522 - nuoM b2277 0.65 +1.5

Or see this region's nucleotide sequence