Strain Fitness in Escherichia coli BW25113 around b2276
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,387,214 | + | +0.5 | |||
2,387,237 | + | yfbP | b2275 | 0.12 | -1.8 |
2,387,245 | - | yfbP | b2275 | 0.13 | +0.5 |
2,387,266 | + | yfbP | b2275 | 0.15 | +0.3 |
2,387,266 | + | yfbP | b2275 | 0.15 | +1.1 |
2,387,269 | - | yfbP | b2275 | 0.15 | -0.3 |
2,387,280 | + | yfbP | b2275 | 0.17 | +0.1 |
2,387,294 | - | yfbP | b2275 | 0.18 | +0.7 |
2,387,297 | + | yfbP | b2275 | 0.19 | -0.4 |
2,387,354 | + | yfbP | b2275 | 0.25 | -0.5 |
2,387,512 | + | yfbP | b2275 | 0.44 | -0.8 |
2,387,545 | - | yfbP | b2275 | 0.48 | -1.7 |
2,387,600 | - | yfbP | b2275 | 0.54 | -0.1 |
2,387,600 | - | yfbP | b2275 | 0.54 | +0.7 |
2,387,640 | + | yfbP | b2275 | 0.59 | -0.9 |
2,387,640 | + | yfbP | b2275 | 0.59 | +0.3 |
2,387,671 | + | yfbP | b2275 | 0.63 | +0.0 |
2,387,675 | + | yfbP | b2275 | 0.63 | +0.2 |
2,387,677 | + | yfbP | b2275 | 0.63 | -0.1 |
2,387,687 | - | yfbP | b2275 | 0.65 | +0.1 |
2,387,687 | - | yfbP | b2275 | 0.65 | -0.3 |
2,387,791 | + | yfbP | b2275 | 0.77 | +0.6 |
2,387,843 | - | yfbP | b2275 | 0.83 | +0.4 |
2,387,845 | + | yfbP | b2275 | 0.83 | -0.8 |
2,387,853 | - | yfbP | b2275 | 0.84 | -0.8 |
2,387,981 | + | +0.3 | |||
2,387,981 | + | -0.3 | |||
2,387,993 | + | +0.5 | |||
2,388,014 | - | -1.7 | |||
2,388,014 | - | -0.2 | |||
2,388,125 | - | +0.5 | |||
2,388,131 | - | +1.5 | |||
2,388,131 | - | -0.3 | |||
2,388,152 | - | +1.5 | |||
2,388,187 | + | -1.1 | |||
2,388,260 | - | nuoN | b2276 | 0.13 | +1.5 |
2,388,314 | + | nuoN | b2276 | 0.17 | +0.1 |
2,388,315 | + | nuoN | b2276 | 0.17 | +0.5 |
2,388,320 | + | nuoN | b2276 | 0.17 | +0.4 |
2,388,482 | + | nuoN | b2276 | 0.28 | -0.3 |
2,388,482 | + | nuoN | b2276 | 0.28 | -1.0 |
2,388,545 | + | nuoN | b2276 | 0.33 | +0.1 |
2,388,665 | - | nuoN | b2276 | 0.41 | +0.6 |
2,388,762 | - | nuoN | b2276 | 0.47 | -0.1 |
2,388,773 | - | nuoN | b2276 | 0.48 | +1.7 |
2,388,835 | + | nuoN | b2276 | 0.52 | -1.1 |
2,388,999 | - | nuoN | b2276 | 0.64 | +0.9 |
2,389,002 | + | nuoN | b2276 | 0.64 | +0.1 |
2,389,005 | - | nuoN | b2276 | 0.64 | -0.5 |
2,389,005 | - | nuoN | b2276 | 0.64 | +1.1 |
2,389,007 | + | nuoN | b2276 | 0.64 | +0.5 |
2,389,258 | - | nuoN | b2276 | 0.81 | +0.4 |
2,389,295 | - | nuoN | b2276 | 0.84 | +0.9 |
2,389,306 | - | nuoN | b2276 | 0.85 | +1.5 |
2,389,306 | - | nuoN | b2276 | 0.85 | -0.1 |
2,389,442 | + | +0.7 | |||
2,389,461 | - | +2.8 | |||
2,389,517 | + | -1.1 | |||
2,389,539 | + | +0.6 | |||
2,389,787 | - | nuoM | b2277 | 0.17 | +0.9 |
2,389,817 | - | nuoM | b2277 | 0.18 | +0.5 |
2,389,843 | - | nuoM | b2277 | 0.20 | +1.2 |
2,389,938 | - | nuoM | b2277 | 0.26 | +3.1 |
2,389,972 | - | nuoM | b2277 | 0.29 | -1.1 |
2,390,000 | - | nuoM | b2277 | 0.30 | -0.5 |
2,390,028 | - | nuoM | b2277 | 0.32 | -0.5 |
2,390,028 | - | nuoM | b2277 | 0.32 | -0.5 |
2,390,151 | - | nuoM | b2277 | 0.40 | -0.3 |
2,390,151 | - | nuoM | b2277 | 0.40 | +1.9 |
2,390,162 | + | nuoM | b2277 | 0.41 | +1.1 |
2,390,162 | + | nuoM | b2277 | 0.41 | +0.5 |
2,390,162 | + | nuoM | b2277 | 0.41 | +0.6 |
2,390,170 | - | nuoM | b2277 | 0.42 | +1.3 |
2,390,211 | + | nuoM | b2277 | 0.44 | +2.1 |
2,390,230 | - | nuoM | b2277 | 0.45 | +0.4 |
2,390,312 | + | nuoM | b2277 | 0.51 | +2.5 |
2,390,341 | + | nuoM | b2277 | 0.53 | +1.5 |
2,390,383 | - | nuoM | b2277 | 0.55 | -0.5 |
2,390,411 | + | nuoM | b2277 | 0.57 | +0.8 |
2,390,426 | - | nuoM | b2277 | 0.58 | -1.1 |
2,390,454 | - | nuoM | b2277 | 0.60 | -0.7 |
2,390,511 | - | nuoM | b2277 | 0.64 | +0.7 |
2,390,516 | - | nuoM | b2277 | 0.64 | -0.3 |
2,390,516 | - | nuoM | b2277 | 0.64 | -1.1 |
2,390,522 | - | -0.1 | |||
2,390,522 | - | nuoM | b2277 | 0.65 | +1.5 |
Or see this region's nucleotide sequence