Strain Fitness in Escherichia coli BW25113 around b2111
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,189,462 | + | yehC | b2110 | 0.71 | +0.4 |
2,189,498 | + | yehC | b2110 | 0.76 | +0.4 |
2,189,498 | + | yehC | b2110 | 0.76 | +0.4 |
2,189,574 | + | yehC | b2110 | 0.87 | +0.4 |
2,189,574 | + | yehC | b2110 | 0.87 | +0.4 |
2,189,574 | + | yehC | b2110 | 0.87 | +0.4 |
2,189,582 | - | yehC | b2110 | 0.88 | +0.4 |
2,189,726 | - | +1.0 | |||
2,189,740 | - | -0.0 | |||
2,189,751 | - | +1.4 | |||
2,189,799 | + | yehD | b2111 | 0.18 | +0.6 |
2,189,808 | - | yehD | b2111 | 0.20 | -0.6 |
2,189,840 | - | yehD | b2111 | 0.25 | +0.8 |
2,189,840 | - | yehD | b2111 | 0.25 | +1.3 |
2,189,908 | - | yehD | b2111 | 0.38 | +1.4 |
2,190,294 | - | +0.4 | |||
2,190,302 | - | +0.4 | |||
2,190,520 | - | +0.5 | |||
2,190,566 | - | yehE | b2112 | 0.10 | -0.1 |
2,190,567 | - | yehE | b2112 | 0.11 | +0.3 |
2,190,581 | + | yehE | b2112 | 0.16 | +0.4 |
2,190,587 | - | yehE | b2112 | 0.18 | -0.2 |
2,190,587 | - | yehE | b2112 | 0.18 | +0.1 |
2,190,587 | - | yehE | b2112 | 0.18 | -0.6 |
2,190,595 | - | yehE | b2112 | 0.21 | -0.2 |
2,190,595 | - | yehE | b2112 | 0.21 | +0.6 |
2,190,598 | - | yehE | b2112 | 0.22 | +0.1 |
2,190,598 | - | yehE | b2112 | 0.22 | +0.5 |
2,190,601 | - | +0.6 | |||
2,190,608 | - | yehE | b2112 | 0.25 | -0.1 |
2,190,608 | - | yehE | b2112 | 0.25 | +0.4 |
2,190,610 | - | yehE | b2112 | 0.26 | +0.4 |
2,190,610 | - | yehE | b2112 | 0.26 | -0.7 |
2,190,610 | - | yehE | b2112 | 0.26 | -0.4 |
2,190,637 | - | yehE | b2112 | 0.35 | +0.4 |
2,190,637 | - | yehE | b2112 | 0.35 | -0.1 |
2,190,641 | + | yehE | b2112 | 0.37 | +0.4 |
2,190,643 | + | yehE | b2112 | 0.38 | +0.4 |
2,190,644 | - | yehE | b2112 | 0.38 | -0.1 |
2,190,648 | + | yehE | b2112 | 0.39 | +0.4 |
2,190,649 | + | yehE | b2112 | 0.40 | +0.4 |
2,190,651 | - | yehE | b2112 | 0.40 | +0.9 |
2,190,651 | - | yehE | b2112 | 0.40 | +0.8 |
2,190,651 | - | yehE | b2112 | 0.40 | -0.4 |
2,190,668 | + | yehE | b2112 | 0.46 | +0.4 |
2,190,677 | - | yehE | b2112 | 0.50 | -0.4 |
2,190,677 | - | yehE | b2112 | 0.50 | +0.8 |
2,190,679 | - | yehE | b2112 | 0.50 | +0.1 |
2,190,680 | + | yehE | b2112 | 0.51 | -1.2 |
2,190,682 | + | yehE | b2112 | 0.51 | +0.4 |
2,190,690 | - | yehE | b2112 | 0.54 | -0.0 |
2,190,694 | + | yehE | b2112 | 0.56 | -0.6 |
2,190,695 | - | yehE | b2112 | 0.56 | +0.4 |
2,190,696 | - | yehE | b2112 | 0.56 | -0.1 |
2,190,697 | + | yehE | b2112 | 0.57 | +0.5 |
2,190,700 | - | yehE | b2112 | 0.58 | -1.1 |
2,190,700 | - | yehE | b2112 | 0.58 | -0.1 |
2,190,700 | - | yehE | b2112 | 0.58 | -0.6 |
2,190,704 | + | yehE | b2112 | 0.59 | -0.4 |
2,190,705 | + | yehE | b2112 | 0.60 | -0.2 |
2,190,708 | - | yehE | b2112 | 0.61 | +0.1 |
2,190,710 | - | yehE | b2112 | 0.61 | +0.5 |
2,190,711 | - | yehE | b2112 | 0.62 | +1.1 |
2,190,712 | - | yehE | b2112 | 0.62 | -0.1 |
2,190,715 | - | yehE | b2112 | 0.63 | -0.2 |
2,190,715 | - | yehE | b2112 | 0.63 | +0.4 |
2,190,739 | - | yehE | b2112 | 0.72 | +1.0 |
2,190,756 | + | yehE | b2112 | 0.78 | +0.9 |
2,190,817 | + | -0.2 | |||
2,190,825 | - | -0.1 | |||
2,190,830 | - | -0.3 | |||
2,190,839 | - | +0.5 | |||
2,190,839 | - | +0.3 | |||
2,190,840 | + | -1.4 | |||
2,190,844 | - | -0.3 | |||
2,190,854 | - | -0.0 | |||
2,190,860 | - | -0.9 | |||
2,190,872 | - | -0.2 | |||
2,190,872 | - | -0.1 | |||
2,190,906 | + | -0.0 | |||
2,190,906 | + | +0.4 | |||
2,190,906 | - | +0.7 | |||
2,190,906 | - | +0.1 | |||
2,190,933 | - | -0.1 | |||
2,190,933 | - | -0.3 | |||
2,190,941 | + | -1.2 | |||
2,190,993 | - | -0.2 | |||
2,191,047 | - | -0.3 | |||
2,191,073 | - | -0.5 | |||
2,191,139 | + | -0.3 |
Or see this region's nucleotide sequence