Strain Fitness in Escherichia coli BW25113 around b1925
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,002,353 | + | fliD | b1924 | 0.32 | +0.0 |
2,002,456 | + | fliD | b1924 | 0.40 | +0.3 |
2,002,456 | + | fliD | b1924 | 0.40 | -0.3 |
2,002,547 | - | fliD | b1924 | 0.46 | -0.5 |
2,002,664 | - | fliD | b1924 | 0.55 | +0.7 |
2,002,664 | - | fliD | b1924 | 0.55 | +0.7 |
2,002,732 | - | fliD | b1924 | 0.59 | +0.3 |
2,002,829 | - | fliD | b1924 | 0.66 | -0.3 |
2,002,892 | - | fliD | b1924 | 0.71 | -0.1 |
2,002,894 | - | fliD | b1924 | 0.71 | -0.1 |
2,002,894 | - | fliD | b1924 | 0.71 | -0.7 |
2,002,913 | - | fliD | b1924 | 0.72 | +0.7 |
2,003,080 | - | fliD | b1924 | 0.84 | -0.1 |
2,003,414 | + | fliS | b1925 | 0.21 | +0.3 |
2,003,451 | - | fliS | b1925 | 0.30 | +1.3 |
2,003,451 | - | fliS | b1925 | 0.30 | -0.3 |
2,003,451 | - | fliS | b1925 | 0.30 | -0.3 |
2,003,462 | + | fliS | b1925 | 0.33 | +0.6 |
2,003,544 | + | fliS | b1925 | 0.53 | +1.3 |
2,003,544 | + | fliS | b1925 | 0.53 | +0.7 |
2,003,699 | + | -0.1 | |||
2,003,734 | + | +0.4 | |||
2,003,735 | - | -0.4 | |||
2,003,738 | - | -0.5 | |||
2,003,923 | - | fliT | b1926 | 0.51 | -0.4 |
2,003,933 | - | fliT | b1926 | 0.54 | -1.4 |
2,004,035 | + | fliT | b1926 | 0.81 | -0.2 |
2,004,073 | + | -0.4 | |||
2,004,135 | + | -0.3 | |||
2,004,148 | + | +0.8 | |||
2,004,241 | + | -0.1 | |||
2,004,241 | + | +0.2 | |||
2,004,249 | - | +0.0 | |||
2,004,249 | - | +0.1 | |||
2,004,249 | - | +0.6 | |||
2,004,299 | + | +0.9 | |||
2,004,446 | + | amyA | b1927 | 0.18 | -0.3 |
2,004,461 | - | amyA | b1927 | 0.19 | +0.1 |
2,004,533 | + | amyA | b1927 | 0.24 | +0.9 |
2,004,543 | - | amyA | b1927 | 0.24 | -0.1 |
2,004,614 | - | amyA | b1927 | 0.29 | +0.5 |
2,004,614 | - | amyA | b1927 | 0.29 | -1.3 |
Or see this region's nucleotide sequence